CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
vacuole 2
mitochondrion 2
cytosol 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011731.1-P	Field mustard	cytosol, peroxisome, plastid	100.0	100.0
CDX69270	Canola	cytosol, peroxisome, plastid	98.02	98.02
CDX72619	Canola	cytosol	82.72	82.11
CDX75619	Canola	cytosol	79.75	79.17
AT4G37070.2	Thale cress	cytosol, peroxisome, plastid	80.74	78.99
CDX69269	Canola	cytosol	80.0	78.07
AT4G37060.2	Thale cress	cytosol, golgi, plastid	78.52	71.46
VIT_07s0031g00860.t01	Wine grape	cytosol	58.52	58.09
CDX72620	Canola	cytosol	59.01	58.01
KRH28482	Soybean	cytosol	57.04	57.32
CDY42720	Canola	cytosol	58.02	56.9
CDX75621	Canola	cytosol	56.3	56.02
CDX69271	Canola	cytosol	56.05	55.77
PGSC0003DMT400040781	Potato	cytosol	54.81	55.64
VIT_07s0031g00870.t01	Wine grape	cytosol	55.8	55.53
VIT_07s0031g00850.t01	Wine grape	cytosol, peroxisome, plastid	54.57	54.98
Solyc02g090630.2.1	Tomato	cytosol	53.58	54.94
GSMUA_Achr3P06850_001	Banana	cytosol	51.6	51.23
CDY21469	Canola	cytosol, peroxisome, vacuole	50.37	50.12
CDX83197	Canola	cytosol	50.12	49.88
CDY42719	Canola	cytosol	82.72	47.05
CDX74862	Canola	cytosol	27.65	24.94
CDX89181	Canola	cytosol	23.46	24.55
CDX93922	Canola	cytosol	23.21	24.29
CDY56455	Canola	cytosol	21.73	24.04
CDY07662	Canola	cytosol	28.15	23.95
CDY24974	Canola	cytosol	28.15	23.95
CDY44633	Canola	cytosol	28.64	23.87
CDX76689	Canola	cytosol	22.47	23.64
CDX67618	Canola	mitochondrion	26.42	22.96
CDY56960	Canola	mitochondrion	26.91	22.43
CDX73423	Canola	mitochondrion	27.16	22.4
CDY07512	Canola	mitochondrion	25.68	21.89
CDY43526	Canola	nucleus	26.17	21.72
CDX68587	Canola	nucleus	26.42	21.44

Protein Annotations

EnsemblPlants:CDX75620	EnsemblPlantsGene:GSBRNA2T00121533001	Gene3D:3.40.1090.10	GO:A0A078CFJ8	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	InterPro:Acyl_Trfase/lysoPLipase	InterPro:IPR002641	InterPro:PNPLA_dom	PANTHER:PTHR32176	PANTHER:PTHR32176:SF6
PFAM:PF01734	PFscan:PS51635	ProteinID:CDX75620	ProteinID:CDX75620.1	SEG:seg	SUPFAM:SSF52151
UniParc:UPI00025467E4	MapMan:5.7.2.2.3	:	:	:	:

Description

BnaA01g00820D

Coordinates

chrLK031804:+:1942579..1945360

Molecular Weight (calculated)

44477.6 Da

IEP (calculated)

6.891

GRAVY (calculated)

-0.207

Length

405 amino acids

Sequence
(BLAST)

001: MHSSCKKNKP PSRGSLVTIL SLDGGGVRGI MVGVILAYLE EQLQALDGED MRLADYFDVV AGTSTGGLMT AMLTVPDETG RPRFAAKDIV PFYLQHSPKI
101: FPQPGGLAAL LPKLPKLLSG PKYDGVYLRN LLNNLLGETR LHQTITNVVI PTFDMKKLQP TIFSSYQALV DPSLDVKISD ICIGTSAAPT YFPPHYFQNE
201: DIQGKTSEFH LVDGGVTANN PTLLAMTAVT KQIVNDNPDM GELKPLGYNK FLVVSIGTGS AQKAKKYSAR EAAKWGIISW LYDNGSTPIL DITMESSRDI
301: VDFHSSVVFK ARQSEDKYLR IDDDTLKGDA SSMDLATKSN LENLVIIGEK MLKNRVVQMN IDTGVYEPVP GNVTNDQELK RFAKILSDER KLRMQSDAMH
401: KVSSS

Best Arabidopsis Sequence Match ( AT4G37070.2 )
(BLAST)

001: MENKSPSKKN KPPSCGSLVT ILSLDGGGVR GIIAGVILAF LEKQLQELDG EEARLADYFD VIAGTSTGGL VTAMLTVPDE TGRPHFAAKD IVPFYLEHCP
101: KIFPQPTGVL ALLPKLPKLL SGPKYSGKYL RNLLSKLLGE TRLHQTLTNI VIPTFDIKKL QPTIFSSYQL LVDPSLDVKV SDICIGTSAA PTFFPPHYFS
201: NEDSQGNKTE FNLVDGAVTA NNPTLVAMTA VSKQIVKNNP DMGKLKPLGF DRFLVISIGT GSTKREEKYS AKKAAKWGII SWLYDDGSTP ILDITMESSR
301: DMIHYHSSVV FKALQSEDKY LRIDDDTLEG DVSTMDLATK SNLENLQKIG EKMLTNRVMQ MNIDTGVYEP VAENITNDEQ LKRYAKILSD ERKLRRLRSD
401: TMIKDSSNES QEIK

Arabidopsis Description

PLP1Patatin [Source:UniProtKB/TrEMBL;Acc:A0A178UVZ8]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.