CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75620	Canola	cytosol, peroxisome, plastid	98.02	98.02
CDX72619	Canola	cytosol	82.72	82.11
CDX75619	Canola	cytosol	80.0	79.41
AT4G37070.2	Thale cress	cytosol, peroxisome, plastid	80.49	78.74
CDX69269	Canola	cytosol	80.25	78.31
AT4G37060.2	Thale cress	cytosol, golgi, plastid	78.27	71.24
VIT_07s0031g00860.t01	Wine grape	cytosol	58.52	58.09
CDX72620	Canola	cytosol	58.77	57.77
KRH28482	Soybean	cytosol	57.04	57.32
CDY42720	Canola	cytosol	57.78	56.66
CDX75621	Canola	cytosol	56.3	56.02
CDX69271	Canola	cytosol	56.05	55.77
PGSC0003DMT400040781	Potato	cytosol	54.81	55.64
VIT_07s0031g00870.t01	Wine grape	cytosol	55.8	55.53
VIT_07s0031g00850.t01	Wine grape	cytosol, peroxisome, plastid	54.57	54.98
Solyc02g090630.2.1	Tomato	cytosol	53.58	54.94
GSMUA_Achr3P06850_001	Banana	cytosol	51.6	51.23
CDY21469	Canola	cytosol, peroxisome, vacuole	50.12	49.88
CDX83197	Canola	cytosol	49.88	49.63
CDY42719	Canola	cytosol	82.22	46.77
CDX74862	Canola	cytosol	27.65	24.94
CDX89181	Canola	cytosol	23.46	24.55
CDX93922	Canola	cytosol	23.21	24.29
CDY07662	Canola	cytosol	28.4	24.16
CDY24974	Canola	cytosol	28.4	24.16
CDY56455	Canola	cytosol	21.73	24.04
CDY44633	Canola	cytosol	28.64	23.87
CDX76689	Canola	cytosol	22.47	23.64
CDX67618	Canola	mitochondrion	26.42	22.96
CDY56960	Canola	mitochondrion	26.91	22.43
CDX73423	Canola	mitochondrion	27.16	22.4
CDY07512	Canola	mitochondrion	25.68	21.89
CDY43526	Canola	nucleus	26.17	21.72
CDX68587	Canola	nucleus	26.42	21.44

Protein Annotations

EnsemblPlants:CDX69270	EnsemblPlantsGene:GSBRNA2T00131085001	Gene3D:3.40.1090.10	GO:A0A078BWT4	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	InterPro:Acyl_Trfase/lysoPLipase	InterPro:IPR002641	InterPro:PNPLA_dom	PANTHER:PTHR32176	PANTHER:PTHR32176:SF6
PFAM:PF01734	PFscan:PS51635	ProteinID:CDX69270	ProteinID:CDX69270.1	SEG:seg	SUPFAM:SSF52151
UniParc:UPI0004EEC3F6	MapMan:5.7.2.2.3	:	:	:	:

Description

BnaC01g01830D

Coordinates

chrLK031789:+:3811000..3813857

Molecular Weight (calculated)

44517.6 Da

IEP (calculated)

6.530

GRAVY (calculated)

-0.242

Length

405 amino acids

Sequence
(BLAST)

001: MDSSCKKNKP PSRGSLVTIL SLDGGGVRGI MVGVILAYLE EQLQALDGED MRLADYFDVV AGTSTGGLMT AMLTVPDETG RPRFSAKDIV PFYLQHSPKI
101: FPQPGGLAAL LPKLPKLLSG PKYDGVYLRN LLNNLLGETR LHQTVTNVVI PTFDMKKLQP TIFSSYQALV DPSLDVKISD ICIGTSAAPT YFPPHYFQNE
201: DIQGKTSEFH LVDGGVTANN PTLLAMTAVT KQIVNDNPDM GELKPLGYNK FLVVSIGTGS AQKEKKYSAR KAAKWGIISW LYDNGSTPIL DITMESSRDI
301: VDFHSSVVFK ARQSEDKYLR IDDDTLKGDA SSMDLATKSN LENLVTIGEK MLKNRVVQMN IDTGVYEPVP GDVTNDQELK RFAKILSDER KLRMQSEAMH
401: KVSSS

Best Arabidopsis Sequence Match ( AT4G37060.1 )
(BLAST)

001: MENESPSKKN MPPSCGTLVT ILSLDGGGVR GIIAGVILAY LEKQLQELDG EHVRVADYFD VIAGTSTGGL VTAMLTAPDE NGRPRFAAKE IVPFYLEHCP
101: KIFPQPTGVL ALLPKLPKLL SGPKYSGNYL RTTLGKLLGE TKLRQTLTNV VIPTFDIKTL QPTIFSSYQA LTDPSLDVKV SDICIGTSAA PTYFPPYYFS
201: NEDSQGKTRH FNLVDGGVTA NNPTLVAMTA VTKQIVNNNP DMGTLNPLGY DQFLVISIGT GSAKKEERYS AKKAAKWGII SWLYEDGTTP ILDITFESSR
301: DIVHYHSSVV FKALQSEDKY LRIDDDTLEG DASTLDLSTK SNLENLIKLG EKMLTNRVMQ MNIDTGTYEP AAENINNDEQ LKRFAKILSE ERKLRRKRSD
401: KMTKDSSIGS QEIK

Arabidopsis Description

PLP5PATATIN-like protein 5 [Source:TAIR;Acc:AT4G37060]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.