CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, vacuole, cytosol

Predictor Summary:

cytosol 2
plastid 1
mitochondrion 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, vacuole
Any Predictor:	cytosol, peroxisome, vacuole
BaCelLo:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX83197
CDY03143
CDY12037
CDY21469

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26560.1	CDY03143	AT1G34570.1	21798944
AT2G26560.1	CDY12037	AT1G34570.1	21798944
AT2G26560.1	CDX83197	AT2G26560.1	21798944
AT2G26560.1	CDY21469	AT2G26560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000578.1-P	Field mustard	cytosol	98.53	99.01
CDX83197	Canola	cytosol	98.53	98.53
AT2G26560.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	88.21	88.21
VIT_18s0001g10910.t01	Wine grape	cytosol	68.06	67.07
VIT_18s0001g10850.t01	Wine grape	cytosol	68.06	67.07
VIT_18s0001g10870.t01	Wine grape	cytosol	67.81	66.83
KXG35787	Sorghum	cytosol	64.37	66.67
TraesCS5D01G249800.1	Wheat	cytosol	66.09	66.42
Zm00001d005911_P001	Maize	cytosol	65.36	66.17
HORVU5Hr1G069130.5	Barley	cytosol	65.6	65.93
TraesCS5A01G243200.1	Wheat	cytosol	65.36	65.68
TraesCS5B01G241100.2	Wheat	cytosol	65.36	65.2
Os09t0462400-00	Rice	cytosol	54.3	64.62
VIT_18s0001g10900.t01	Wine grape	cytosol	31.2	63.18
GSMUA_Achr11P...	Banana	cytosol	51.84	62.43
KRH15338	Soybean	cytosol	61.43	61.27
KRH15334	Soybean	cytosol	61.18	61.03
VIT_18s0001g10830.t01	Wine grape	mitochondrion, plasma membrane, plastid	68.06	60.22
KRH05709	Soybean	cytosol	59.71	59.56
KRH05708	Soybean	cytosol	54.3	58.62
HORVU3Hr1G101170.1	Barley	mitochondrion, plastid	28.5	57.71
CDX72620	Canola	cytosol	56.76	56.07
CDX69271	Canola	cytosol	56.02	56.02
CDX75621	Canola	cytosol	55.28	55.28
HORVU4Hr1G050060.10	Barley	plastid	34.89	55.04
CDY42720	Canola	cytosol	55.77	54.96
HORVU4Hr1G019140.24	Barley	cytosol	29.24	54.84
HORVU2Hr1G060260.1	Barley	plastid	36.61	54.18
GSMUA_Achr9P27010_001	Banana	cytosol	57.0	54.08
CDX72619	Canola	cytosol	51.84	51.72
GSMUA_Achr7P12940_001	Banana	cytosol	59.46	50.84
CDX75619	Canola	cytosol	50.86	50.74
CDX75620	Canola	cytosol, peroxisome, plastid	50.12	50.37
CDX69270	Canola	cytosol, peroxisome, plastid	49.88	50.12
CDX69269	Canola	cytosol	50.86	49.88
CDY42719	Canola	cytosol	51.6	29.49
CDX89181	Canola	cytosol	23.1	24.29
CDX74862	Canola	cytosol	26.54	24.05
CDX93922	Canola	cytosol	22.85	24.03
CDY56455	Canola	cytosol	21.13	23.5
CDX67618	Canola	mitochondrion	26.78	23.39
CDX76689	Canola	cytosol	22.11	23.38
CDY24974	Canola	cytosol	27.27	23.32
CDY07662	Canola	cytosol	27.27	23.32
CDY44633	Canola	cytosol	27.27	22.84
CDY56960	Canola	mitochondrion	26.78	22.43
CDY07512	Canola	mitochondrion	26.04	22.32
CDX73423	Canola	mitochondrion	26.78	22.2
CDY43526	Canola	nucleus	25.31	21.11
CDX68587	Canola	nucleus	25.55	20.84

Protein Annotations

Gene3D:3.40.1090.10	MapMan:5.7.2.2.3	GO:A0A078G7S7	UniProt:A0A078G7S7	InterPro:Acyl_Trfase/lysoPLipase	EnsemblPlants:CDY21469
ProteinID:CDY21469	ProteinID:CDY21469.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0016042	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00015880001	InterPro:IPR002641
PFAM:PF01734	InterPro:PNPLA_dom	PFscan:PS51635	PANTHER:PTHR32176	PANTHER:PTHR32176:SF6	SUPFAM:SSF52151
UniParc:UPI0004EE52C2	:	:	:	:	:

Description

BnaC03g27280DPatatin [Source:UniProtKB/TrEMBL;Acc:A0A078G7S7]

Coordinates

chrLK032121:+:357246..359917

Molecular Weight (calculated)

44592.1 Da

IEP (calculated)

6.381

GRAVY (calculated)

-0.255

Length

407 amino acids

Sequence
(BLAST)

001: MQMESPKSPL QPPTYGNLVT ILSIDGGGIR GIIPATILAF LESELQKLDG NEARLADYFD VVAGTSTGGL VTAMLTAPNK EGRPLFAASE IKEFYLEHCP
101: KIFPQNHFPF SATKNLVKSL TGPKYDGEYL HQLIHAKLGD TRLHQTLTNV VIPTFDIKHL QPTIFSSYEV KKNPLKNATL ADITISTSAA PTYLPAHFFK
201: THDSAGNVKE YNLIDGGVAA NNPALVAIGE VTKEITRGSS DFFPIRPNDY GRFLVLSLGT GTRKSEEKFN ANEVAGWGML SWLTHDNSTP LIDAFMQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLNG DAASVDISTV ENLDILAKTG DELLKKPVSR VNLESGCNEN AYEVTNEKAL IKLAGILSKE KMIRDSRSPH
401: EKKPNSK

Best Arabidopsis Sequence Match ( AT2G26560.1 )
(BLAST)

001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI

Arabidopsis Description

PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.