Factsheet for GSMUA_Achr9P27010_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
vacuole 2
mitochondrion 2
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr7P12940_001
GSMUA_Achr9P27010_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26560.1	GSMUA_Achr11P...	AT2G26560.1	21798944
AT2G26560.1	GSMUA_Achr7P12940_001	AT2G26560.1	21798944
AT2G26560.1	GSMUA_Achr9P27010_001	AT2G26560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P12940_001	Banana	cytosol	70.16	63.24
VIT_18s0001g10850.t01	Wine grape	cytosol	59.21	61.5
VIT_18s0001g10910.t01	Wine grape	cytosol	58.51	60.77
VIT_18s0001g10870.t01	Wine grape	cytosol	58.28	60.53
GSMUA_Achr11P...	Banana	cytosol	47.55	60.35
VIT_18s0001g10930.t01	Wine grape	cytosol	42.66	58.47
GSMUA_Achr3P06850_001	Banana	cytosol	55.24	58.09
Bra000578.1-P	Field mustard	cytosol	54.08	57.28
CDY21469	Canola	cytosol, peroxisome, vacuole	54.08	57.0
GSMUA_Achr7P11810_001	Banana	cytosol	53.85	56.9
CDX83197	Canola	cytosol	53.85	56.76
GSMUA_Achr10P...	Banana	cytosol	52.91	56.47
GSMUA_Achr2P22340_001	Banana	cytosol	54.55	56.39
KRH15338	Soybean	cytosol	53.61	56.37
KRH15334	Soybean	cytosol	53.38	56.13
KRH05708	Soybean	cytosol	49.18	55.97
VIT_18s0001g10900.t01	Wine grape	cytosol	26.11	55.72
KRH05709	Soybean	cytosol	51.98	54.66
VIT_18s0001g10830.t01	Wine grape	mitochondrion, plasma membrane, plastid	58.28	54.35
GSMUA_Achr6P02240_001	Banana	cytosol	52.21	54.24
GSMUA_Achr7P18980_001	Banana	plastid	52.21	54.24
AT2G26560.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	51.28	54.05
GSMUA_Achr3P20370_001	Banana	cytosol	50.82	52.66
GSMUA_Achr2P12330_001	Banana	cytosol	21.91	23.5
GSMUA_Achr5P03830_001	Banana	cytosol	22.84	22.58
GSMUA_Achr8P18860_001	Banana	cytosol	17.25	22.29
GSMUA_AchrUn_...	Banana	cytosol	18.41	21.88
GSMUA_Achr11P...	Banana	cytosol	13.99	21.43
GSMUA_Achr5P18500_001	Banana	cytosol	19.35	21.39
GSMUA_Achr11P...	Banana	mitochondrion	13.52	20.14
GSMUA_Achr8P07160_001	Banana	cytosol	17.72	20.11
GSMUA_Achr5P26630_001	Banana	cytosol	16.08	20.0
GSMUA_Achr5P02370_001	Banana	cytosol	17.48	19.08
GSMUA_Achr2P01360_001	Banana	cytosol	16.55	17.79
GSMUA_Achr6P31310_001	Banana	cytosol	17.25	15.74
GSMUA_AchrUn_...	Banana	plastid	14.92	14.55
GSMUA_Achr4P31750_001	Banana	cytosol	21.45	13.49

Protein Annotations

EnsemblPlants:GSMUA_Achr9P27010_001	EnsemblPlants:GSMUA_Achr9T27010_001	EnsemblPlantsGene:GSMUA_Achr9G27010_001	Gene3D:3.40.1090.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016042	GO:GO:0016787
InterPro:Acyl_Trfase/lysoPLipase	InterPro:IPR002641	InterPro:PNPLA_dom	PANTHER:PTHR32176	PANTHER:PTHR32176:SF6	PFAM:PF01734
PFscan:PS51635	SUPFAM:SSF52151	UniParc:UPI000295777B	UniProt:M0U3V8	MapMan:5.7.2.2.3	:

Description

Putative Patatin group A-3 [Source:GMGC_GENE;Acc:GSMUA_Achr9G27010_001]

Coordinates

chr9:-:31319253..31321772

Molecular Weight (calculated)

47940.6 Da

IEP (calculated)

7.749

GRAVY (calculated)

-0.129

Length

429 amino acids

Sequence
(BLAST)

001: MEKSKSKINQ IQAPTFGNLI TILSIDGGGI RGIIPATILS FLESELQKLD GEDARIADYF DVISGTSTGG LVTAMLTAPD DNNRPLFAAK DIKSFYLEHS
101: SKIFPQIGGL LAGVRRMFQA VWGPKYNGKY LHSLIKEKLG GVRLHQTLTN VIIPTFDIKQ LHPIIFSSYE RNRILDARLS DICIGTTAAP TYLPAHYFQT
201: KCSKGSSREF HLVDGGVAAN NPALVSVGEV TKELHKKNPD YFPYKPMDYR KILLISLGTG SAKVEGKFSA KRASKWGVLG WLLSSGSNPL FDVFMQSSAD
301: MVDIHLSVVF QALQSKSNYL RIEDDTLSGT VSSVDISTKE NLADLVNVGE QLLKKPVSRE INVFFYYIDL LYYSLYFPDM DTYVDNGINK NHQLLEEITE
401: PYEHTDSTIF VKVIKERNDL FAYVVSKRY

Best Arabidopsis Sequence Match ( AT2G26560.1 )
(BLAST)

001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI

Arabidopsis Description

PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.