Factsheet for GSMUA_Achr6P02240_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
vacuole 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P18980_001	Banana	plastid	78.45	78.45
GSMUA_Achr3P20370_001	Banana	cytosol	75.3	75.12
GSMUA_Achr10P...	Banana	cytosol	62.71	64.43
GSMUA_Achr7P11810_001	Banana	cytosol	60.53	61.58
GSMUA_Achr2P22340_001	Banana	cytosol	61.26	60.96
GSMUA_Achr11P...	Banana	cytosol	46.97	57.4
GSMUA_Achr3P06850_001	Banana	cytosol	55.69	56.37
GSMUA_Achr9P27010_001	Banana	cytosol	54.24	52.21
GSMUA_Achr7P12940_001	Banana	cytosol	55.69	48.32
GSMUA_Achr2P12330_001	Banana	cytosol	22.52	23.25
GSMUA_Achr8P18860_001	Banana	cytosol	18.4	22.89
GSMUA_Achr5P03830_001	Banana	cytosol	23.97	22.81
GSMUA_Achr5P18500_001	Banana	cytosol	21.31	22.68
GSMUA_Achr11P...	Banana	cytosol	14.77	21.79
GSMUA_Achr8P07160_001	Banana	cytosol	19.85	21.69
GSMUA_Achr5P26630_001	Banana	cytosol	17.43	20.87
GSMUA_Achr11P...	Banana	mitochondrion	14.29	20.49
GSMUA_AchrUn_...	Banana	cytosol	17.19	19.67
GSMUA_Achr2P01360_001	Banana	cytosol	18.16	18.8
GSMUA_Achr5P02370_001	Banana	cytosol	16.95	17.81
GSMUA_Achr6P31310_001	Banana	cytosol	19.37	17.02
GSMUA_AchrUn_...	Banana	plastid	14.77	13.86
GSMUA_Achr4P31750_001	Banana	cytosol	20.34	12.32

Protein Annotations

Gene3D:3.40.1090.10	MapMan:5.7.2.2.3	InterPro:Acyl_Trfase/lysoPLipase	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016042	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr6G02240_001
EnsemblPlants:GSMUA_Achr6P02240_001	EnsemblPlants:GSMUA_Achr6T02240_001	InterPro:IPR002641	UniProt:M0T3H2	PFAM:PF01734	InterPro:PNPLA_dom
PFscan:PS51635	PANTHER:PTHR32176	PANTHER:PTHR32176:SF6	SUPFAM:SSF52151	UniParc:UPI000295C54B	SEG:seg

Description

Putative Patatin group A-3 [Source:GMGC_GENE;Acc:GSMUA_Achr6G02240_001]

Coordinates

chr6:+:1442130..1444042

Molecular Weight (calculated)

45560.8 Da

IEP (calculated)

7.540

GRAVY (calculated)

-0.187

Length

413 amino acids

Sequence
(BLAST)

001: MAETQTSGRH HHRHNAHHLH RPPPCKGKLI TVLSIDGGGV RGIIPGTIIN FLETKLQELD GPDARVADYF DVVTGTSTGG LLTAMITAPD EKQRPLFSAK
101: DIIDFYLQNC PKIFPQGSGF LSSVRKLAGA IMGPKYDGKY LHSKVKDLLK DIKLSQTLTN VIIPAFDIKL LQPIIFSSFE ARLEPLKDAH VADICISTSA
201: APTFLPAHYF ETQDSNGNTR SYNLIDGGVA ANNPTLVAMS QIKKEMFLMN QDFHSYKPID YHNFIIISIG TGAAKVEKKF SAHLASKWGI LQWLYHGGST
301: PLIDSFSHAS ADIVDVHMSS VFQSLHCEQN YLRIQDETLM GQASSVDVST KENLLELVKI GESLLKKPVS RVNLETGDFE EVKGEGTNAE ALTRLAKILS
401: EERHRRKGVM ALN

Best Arabidopsis Sequence Match ( AT2G26560.1 )
(BLAST)

001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI

Arabidopsis Description

PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.