Factsheet for GSMUA_Achr7P12940_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
vacuole 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr7P12940_001
GSMUA_Achr9P27010_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26560.1	GSMUA_Achr11P...	AT2G26560.1	21798944
AT2G26560.1	GSMUA_Achr7P12940_001	AT2G26560.1	21798944
AT2G26560.1	GSMUA_Achr9P27010_001	AT2G26560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P27010_001	Banana	cytosol	63.24	70.16
GSMUA_Achr11P...	Banana	cytosol	45.8	64.5
VIT_18s0001g10910.t01	Wine grape	cytosol	55.25	63.68
VIT_18s0001g10870.t01	Wine grape	cytosol	55.25	63.68
VIT_18s0001g10850.t01	Wine grape	cytosol	55.25	63.68
VIT_18s0001g10930.t01	Wine grape	cytosol	41.81	63.58
VIT_18s0001g10900.t01	Wine grape	cytosol	26.47	62.69
KRH15338	Soybean	cytosol	51.47	60.05
KRH15334	Soybean	cytosol	51.26	59.8
Bra000578.1-P	Field mustard	cytosol	50.84	59.75
CDY21469	Canola	cytosol, peroxisome, vacuole	50.84	59.46
CDX83197	Canola	cytosol	50.63	59.21
GSMUA_Achr3P06850_001	Banana	cytosol	50.63	59.07
KRH05708	Soybean	cytosol	46.64	58.89
KRH05709	Soybean	cytosol	50.42	58.82
GSMUA_Achr10P...	Banana	cytosol	48.95	57.96
GSMUA_Achr7P18980_001	Banana	plastid	50.21	57.87
VIT_18s0001g10830.t01	Wine grape	mitochondrion, plasma membrane, plastid	55.88	57.83
GSMUA_Achr7P11810_001	Banana	cytosol	49.16	57.64
GSMUA_Achr2P22340_001	Banana	cytosol	50.21	57.59
AT2G26560.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	48.53	56.76
GSMUA_Achr6P02240_001	Banana	cytosol	48.32	55.69
GSMUA_Achr3P20370_001	Banana	cytosol	48.11	55.31
GSMUA_Achr2P12330_001	Banana	cytosol	21.43	25.5
GSMUA_AchrUn_...	Banana	cytosol	19.12	25.21
GSMUA_Achr5P03830_001	Banana	cytosol	22.48	24.65
GSMUA_Achr5P18500_001	Banana	cytosol	19.54	23.97
GSMUA_Achr8P18860_001	Banana	cytosol	16.6	23.8
GSMUA_Achr5P26630_001	Banana	cytosol	17.02	23.48
GSMUA_Achr11P...	Banana	mitochondrion	13.87	22.92
GSMUA_Achr11P...	Banana	cytosol	13.24	22.5
GSMUA_Achr8P07160_001	Banana	cytosol	17.65	22.22
GSMUA_Achr5P02370_001	Banana	cytosol	17.65	21.37
GSMUA_Achr2P01360_001	Banana	cytosol	15.97	19.05
GSMUA_Achr6P31310_001	Banana	cytosol	17.65	17.87
GSMUA_Achr4P31750_001	Banana	cytosol	21.64	15.1
GSMUA_AchrUn_...	Banana	plastid	13.66	14.77

Protein Annotations

EnsemblPlants:GSMUA_Achr7P12940_001	EnsemblPlants:GSMUA_Achr7T12940_001	EnsemblPlantsGene:GSMUA_Achr7G12940_001	Gene3D:3.40.1090.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016042	GO:GO:0016787
InterPro:Acyl_Trfase/lysoPLipase	InterPro:IPR002641	InterPro:PNPLA_dom	PANTHER:PTHR32176	PANTHER:PTHR32176:SF6	PFAM:PF01734
PFscan:PS51635	SUPFAM:SSF52151	UniParc:UPI00029592D5	UniProt:M0TH31	MapMan:5.7.2.2.3	:

Description

Putative Patatin group A-3 [Source:GMGC_GENE;Acc:GSMUA_Achr7G12940_001]

Coordinates

chr7:-:10391706..10393831

Molecular Weight (calculated)

52325.9 Da

IEP (calculated)

8.269

GRAVY (calculated)

-0.106

Length

476 amino acids

Sequence
(BLAST)

001: MERSKSIVKQ ASTCGKLITI LSIDGGGIRG VIPATILSFL ESELQKLDGD DVRIADYFDV IAGTSTGGLV TAMLAAPDEN NRPLFAAKDM KSFYLEHSPK
101: IFPQIGGFLA PVRRMFRSLW GPKYSGTYLH SLIREKLGGV RLHETLTNVI IPTFDIKQLH PTIFSSYEVS TLMLTCIIFF YSIYPQSYLP VQILTSRMCM
201: ASASSANSLI MGERRCSLDA CLSDICIGTT AAPTYFPAHY FETKDSEGSS SREFHLIDGG IAANNPALVA VGEVTKEVHK KNPDHFNREA VDYRKFLLIS
301: LGTGSAKVEG KYRAKSASRW GVFGWLLGGG STPLVDVLMQ SCADIVDIHL SVVFKALRSE SNYLRIEDDT LTGAVSSADI STEENLDDLV SVGERLLKKP
401: VSRVNLETGV FEPVGNGEGT NEDALRRFAR LLSDERRLRK LRSPASGGNH HRIQEYVTPK DRIRAVKTTR AIPTSS

Best Arabidopsis Sequence Match ( AT4G37070.2 )
(BLAST)

001: MENKSPSKKN KPPSCGSLVT ILSLDGGGVR GIIAGVILAF LEKQLQELDG EEARLADYFD VIAGTSTGGL VTAMLTVPDE TGRPHFAAKD IVPFYLEHCP
101: KIFPQPTGVL ALLPKLPKLL SGPKYSGKYL RNLLSKLLGE TRLHQTLTNI VIPTFDIKKL QPTIFSSYQL LVDPSLDVKV SDICIGTSAA PTFFPPHYFS
201: NEDSQGNKTE FNLVDGAVTA NNPTLVAMTA VSKQIVKNNP DMGKLKPLGF DRFLVISIGT GSTKREEKYS AKKAAKWGII SWLYDDGSTP ILDITMESSR
301: DMIHYHSSVV FKALQSEDKY LRIDDDTLEG DVSTMDLATK SNLENLQKIG EKMLTNRVMQ MNIDTGVYEP VAENITNDEQ LKRYAKILSD ERKLRRLRSD
401: TMIKDSSNES QEIK

Arabidopsis Description

PLP1Patatin [Source:UniProtKB/TrEMBL;Acc:A0A178UVZ8]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.