Factsheet for VIT_18s0001g10930.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g10900.t01	Wine grape	cytosol	39.62	61.69
VIT_00s0567g00050.t01	Wine grape	cytosol	41.85	61.5
HORVU4Hr1G019140.24	Barley	cytosol	36.1	52.07
VIT_18s0001g10850.t01	Wine grape	cytosol	66.77	50.61
VIT_18s0001g10870.t01	Wine grape	cytosol	66.77	50.61
VIT_18s0001g10910.t01	Wine grape	cytosol	66.77	50.61
HORVU5Hr1G069130.5	Barley	cytosol	65.18	50.37
TraesCS5D01G249800.1	Wheat	cytosol	64.86	50.12
TraesCS5B01G241100.2	Wheat	cytosol	65.18	50.0
TraesCS5A01G243200.1	Wheat	cytosol	64.22	49.63
VIT_07s0031g00860.t01	Wine grape	cytosol	63.26	48.53
Zm00001d005911_P001	Maize	cytosol	62.3	48.51
KXG35787	Sorghum	cytosol	60.38	48.09
VIT_18s0001g10880.t01	Wine grape	cytosol	62.3	48.03
VIT_18s0001g11010.t01	Wine grape	cytosol	61.98	47.78
VIT_18s0001g10950.t01	Wine grape	cytosol, peroxisome, plastid	61.98	47.78
VIT_18s0001g10970.t01	Wine grape	cytosol, peroxisome, plastid	61.66	47.54
VIT_18s0001g10940.t01	Wine grape	cytosol, peroxisome, plastid	61.34	47.29
VIT_07s0031g00850.t01	Wine grape	cytosol, peroxisome, plastid	60.7	47.26
VIT_00s0567g00060.t01	Wine grape	cytosol	56.23	47.06
VIT_18s0001g10980.t01	Wine grape	cytosol, peroxisome, plastid	58.15	46.55
Os09t0462400-00	Rice	cytosol	50.8	46.49
GSMUA_Achr11P...	Banana	cytosol	49.52	45.86
VIT_18s0001g10830.t01	Wine grape	mitochondrion, plasma membrane, plastid	67.09	45.65
VIT_07s0031g00870.t01	Wine grape	cytosol	57.19	43.98
VIT_18s0001g10920.t01	Wine grape	extracellular	60.06	43.12
GSMUA_Achr9P27010_001	Banana	cytosol	58.47	42.66
GSMUA_Achr7P12940_001	Banana	cytosol	63.58	41.81
VIT_07s0005g01880.t01	Wine grape	plastid	44.73	36.84
VIT_07s0005g01860.t01	Wine grape	cytosol	42.81	35.26
VIT_07s0005g01890.t01	Wine grape	mitochondrion	42.49	34.91
HORVU4Hr1G050060.10	Barley	plastid	27.8	33.72
HORVU2Hr1G060260.1	Barley	plastid	29.07	33.09
VIT_07s0005g01840.t01	Wine grape	cytosol, mitochondrion, plastid	42.49	31.37
HORVU3Hr1G101170.1	Barley	mitochondrion, plastid	16.61	25.87
VIT_00s0567g00040.t01	Wine grape	cytosol	12.14	23.46
VIT_13s0019g04200.t01	Wine grape	cytosol	28.43	19.43
VIT_10s0092g00150.t01	Wine grape	cytosol	26.2	19.2
VIT_07s0151g01130.t01	Wine grape	cytosol	23.0	18.7

Protein Annotations

Gene3D:3.40.1090.10	MapMan:5.7.2.2.3	EMBL:AM426288	InterPro:Acyl_Trfase/lysoPLipase	ProteinID:CAN71270	ProteinID:CAN71270.1
ProteinID:CCB45863	ProteinID:CCB45863.1	UniProt:F6H013	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824
GO:GO:0004620	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016020	GO:GO:0016042	GO:GO:0016787
GO:GO:0047372	InterPro:IPR002641	PFAM:PF01734	InterPro:PNPLA_dom	PFscan:PS51635	PANTHER:PTHR32176
PANTHER:PTHR32176:SF6	SUPFAM:SSF52151	UniParc:UPI0002108109	ArrayExpress:VIT_18s0001g10930	EnsemblPlantsGene:VIT_18s0001g10930	EnsemblPlants:VIT_18s0001g10930.t01
SEG:seg	:	:	:	:	:

Description

Patatin [Source:UniProtKB/TrEMBL;Acc:F6H013]

Coordinates

chr18:-:9249032..9251242

Molecular Weight (calculated)

34652.8 Da

IEP (calculated)

8.432

GRAVY (calculated)

-0.160

Length

313 amino acids

Sequence
(BLAST)

001: MEEKKSIHKP STYGKLITIL SIDGGGIRGI IPGTILSFPE AELQKLDGED ARIADYFDVI AGTSTGSLIT AMLTAPNINN RPLFAAIDIQ HFYLEHCPKI
101: FPQNSCPFAN IAAVIRALLG PRYNGKYLHS LVREKLGNIR LHQTLTKVVI PTFDIKLLQP TIFSSFKVKH DPTIDASLSD ICMGTSAAPT YLPAHLFETK
201: DYATERARTF NLIYGGVAAN NPALIAMGED DTLNHVLSSV DYATKDNLYN LVKVSEGLLK KPVSRVNLET GNLEPSSKET NEDALIRFAN ILSKEKRLRD
301: AKPWMDVQQI NRK

Best Arabidopsis Sequence Match ( AT2G26560.1 )
(BLAST)

001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI

Arabidopsis Description

PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.