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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • mitochondrion 1
  • cytosol 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid
iPSORT:mitochondrion
MultiLoc:cytosol
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU2Hr1G060260.1
HORVU3Hr1G101170.1
HORVU3Hr1G107330.1
HORVU4Hr1G019140.24
HORVU4Hr1G050060.10
HORVU5Hr1G069130.5
HORVU7Hr1G009930.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G26560.1 HORVU3Hr1G107330.1 AT1G34570.1 21798944
AT2G26560.1 HORVU7Hr1G009930.1 AT1G34570.1 21798944
AT2G26560.1 HORVU2Hr1G060260.1 AT2G26560.1 21798944
AT2G26560.1 HORVU3Hr1G101170.1 AT2G26560.1 21798944
AT2G26560.1 HORVU4Hr1G019140.24 AT2G26560.1 21798944
AT2G26560.1 HORVU4Hr1G050060.10 AT2G26560.1 21798944
AT2G26560.1 HORVU5Hr1G069130.5 AT2G26560.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5D01G249800.1 Wheat cytosol 96.54 96.54
TraesCS5A01G243200.1 Wheat cytosol 95.31 95.31
TraesCS5B01G241100.2 Wheat cytosol 95.31 94.61
HORVU4Hr1G050060.10 Barley plastid 57.53 90.31
HORVU2Hr1G060260.1 Barley plastid 59.75 88.0
HORVU3Hr1G101170.1 Barley mitochondrion, plastid 42.72 86.07
Os09t0462400-00 Rice cytosol 72.1 85.38
Zm00001d005911_P001 Maize cytosol 83.46 84.08
KXG35787 Sorghum cytosol 80.99 83.46
HORVU4Hr1G019140.24 Barley cytosol 42.47 79.26
VIT_18s0001g10870.t01 Wine grape cytosol 69.14 67.8
GSMUA_Achr11P... Banana cytosol 56.54 67.75
VIT_18s0001g10910.t01 Wine grape cytosol 68.89 67.55
VIT_18s0001g10850.t01 Wine grape cytosol 68.64 67.31
Bra000578.1-P Field mustard cytosol 65.93 65.93
CDY21469 Canola cytosol, peroxisome, vacuole 65.93 65.6
CDX83197 Canola cytosol 65.68 65.36
VIT_18s0001g10930.t01 Wine grape cytosol 50.37 65.18
AT2G26560.1 Thale cress cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole 64.2 63.88
VIT_18s0001g10900.t01 Wine grape cytosol 31.11 62.69
KRH15338 Soybean cytosol 62.47 62.01
KRH15334 Soybean cytosol 62.22 61.76
VIT_18s0001g10830.t01 Wine grape mitochondrion, plasma membrane, plastid 69.14 60.87
KRH05709 Soybean cytosol 60.74 60.29
KRH05708 Soybean cytosol 56.05 60.21
HORVU2Hr1G037280.1 Barley cytosol 35.31 55.43
HORVU1Hr1G012140.1 Barley plastid 54.57 54.17
HORVU1Hr1G069200.2 Barley cytosol 52.84 52.71
HORVU4Hr1G075070.7 Barley plastid 56.05 52.18
HORVU2Hr1G029000.2 Barley cytosol 52.84 51.94
HORVU5Hr1G119820.1 Barley plastid 50.62 51.64
HORVU5Hr1G119810.5 Barley cytosol 48.64 51.04
HORVU7Hr1G113030.2 Barley plastid 32.84 50.96
HORVU4Hr1G074970.1 Barley mitochondrion 51.36 49.29
HORVU7Hr1G006840.3 Barley cytosol 34.57 48.28
HORVU7Hr1G036460.1 Barley plasma membrane 54.32 48.14
HORVU7Hr1G113080.1 Barley cytosol 54.81 47.54
HORVU3Hr1G004220.4 Barley cytosol, plastid 56.3 47.5
HORVU6Hr1G027900.2 Barley cytosol 40.0 47.23
HORVU6Hr1G001990.1 Barley cytosol 35.06 31.56
HORVU2Hr1G126660.1 Barley cytosol, nucleus 41.98 30.2
HORVU5Hr1G103060.1 Barley mitochondrion 27.65 23.58
HORVU0Hr1G008670.3 Barley cytosol 22.96 23.02
HORVU5Hr1G093250.4 Barley cytosol 24.94 22.44
HORVU5Hr1G011400.6 Barley mitochondrion 23.21 20.98
HORVU2Hr1G126570.1 Barley extracellular 18.27 20.73
HORVU7Hr1G106600.4 Barley cytosol 11.85 18.68
Protein Annotations
EnsemblPlants:HORVU5Hr1G069130.5EnsemblPlantsGene:HORVU5Hr1G069130Gene3D:3.40.1090.10GO:GO:0003674GO:GO:0003824GO:GO:0006629
GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0016042GO:GO:0016787InterPro:Acyl_Trfase/lysoPLipase
InterPro:IPR002641InterPro:PNPLA_domPANTHER:PTHR32176PANTHER:PTHR32176:SF6PFAM:PF01734PFscan:PS51635
SUPFAM:SSF52151UniParc:UPI000B488470UniProt:A0A287RNA7MapMan:5.7.2.2.3::
Description
Patatin [Source:UniProtKB/TrEMBL;Acc:A0A287RNA7]
Coordinates
chrchr5H:-:520671064..520677970
Molecular Weight (calculated)
44771.1 Da
IEP (calculated)
9.334
GRAVY (calculated)
-0.206
Length
405 amino acids
Sequence
(BLAST)
001: METGKHILCR HPPTYGNLIT ILSIDGGGIR GLIPAVALAF LESELQKLDG AEARLADYFD VIAGTSTGGL VTAMLTAPNK KRRPLFAAKD IQAFYMDHAP
101: RIFPQLRGAF GRIMRILRSL SGPCYDGKYL HEVVRKKLGS ARLHQTLTNV VIPTFDIKRL QPTIFSSYEV KKKKKSTMDA LLSDICISTS AAPTYLPAHY
201: FKTEDSHGNT KEFNLIDGGV AANNPALVAI GEVSKQIFKQ DSDFFPIKPM DYGRFLVISL GTGSSKFEEK YDAQKAKSWG VLDWLLSSGS TPLVDIFTRA
301: SADMVDIHIA SVFKALHSEQ NYLRIQDDTL RGTLSSVDVA TKDNLEKLVN VGELLLKKPV SRANLETGQM VPTCSETEET NEEALKRFAK LLSDEKQIRQ
401: ARSPK
Best Arabidopsis Sequence Match ( AT2G26560.1 )
(BLAST)
001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI
Arabidopsis Description
PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.