Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G177300.1 | Wheat | cytosol | 85.56 | 95.83 |
| TraesCS7B01G082400.1 | Wheat | cytosol | 84.9 | 95.1 |
| TraesCS7D01G178600.1 | Wheat | cytosol | 84.68 | 94.85 |
| HORVU1Hr1G069200.2 | Barley | cytosol | 78.34 | 88.18 |
| HORVU1Hr1G012140.1 | Barley | plastid | 75.93 | 85.05 |
| Zm00001d007604_P001 | Maize | cytosol, peroxisome, plastid | 68.93 | 77.4 |
| EES08841 | Sorghum | cytosol | 69.8 | 77.24 |
| EES08840 | Sorghum | cytosol | 68.27 | 77.04 |
| Zm00001d007620_P001 | Maize | cytosol, peroxisome, plastid | 68.49 | 76.9 |
| Zm00001d007616_P001 | Maize | cytosol, peroxisome, plastid | 68.49 | 76.9 |
| Zm00001d007618_P001 | Maize | mitochondrion | 68.05 | 76.41 |
| EES10106 | Sorghum | plastid | 68.49 | 76.34 |
| Os11t0614400-01 | Rice | plasma membrane | 69.58 | 76.26 |
| Zm00001d007623_P002 | Maize | mitochondrion | 68.71 | 75.12 |
| Zm00001d048841_P001 | Maize | mitochondrion, plasma membrane | 66.74 | 74.39 |
| Os11t0614500-02 | Rice | cytosol | 37.86 | 70.61 |
| HORVU5Hr1G069130.5 | Barley | cytosol | 48.14 | 54.32 |
| HORVU4Hr1G075070.7 | Barley | plastid | 50.98 | 53.56 |
| HORVU4Hr1G074970.1 | Barley | mitochondrion | 47.7 | 51.66 |
| HORVU2Hr1G037280.1 | Barley | cytosol | 29.1 | 51.55 |
| HORVU7Hr1G113030.2 | Barley | plastid | 29.32 | 51.34 |
| HORVU5Hr1G119820.1 | Barley | plastid | 42.67 | 49.12 |
| HORVU7Hr1G113080.1 | Barley | cytosol | 50.11 | 49.04 |
| HORVU5Hr1G119810.5 | Barley | cytosol | 41.36 | 48.96 |
| HORVU2Hr1G029000.2 | Barley | cytosol | 43.98 | 48.79 |
| HORVU3Hr1G101170.1 | Barley | mitochondrion, plastid | 21.44 | 48.76 |
| HORVU3Hr1G004220.4 | Barley | cytosol, plastid | 51.2 | 48.75 |
| HORVU4Hr1G050060.10 | Barley | plastid | 27.35 | 48.45 |
| HORVU2Hr1G060260.1 | Barley | plastid | 29.1 | 48.36 |
| HORVU6Hr1G027900.2 | Barley | cytosol | 33.92 | 45.19 |
| HORVU7Hr1G006840.3 | Barley | cytosol | 28.45 | 44.83 |
| HORVU4Hr1G019140.24 | Barley | cytosol | 20.35 | 42.86 |
| HORVU6Hr1G001990.1 | Barley | cytosol | 37.86 | 38.44 |
| HORVU2Hr1G126660.1 | Barley | cytosol, nucleus | 37.42 | 30.37 |
| HORVU0Hr1G008670.3 | Barley | cytosol | 18.38 | 20.79 |
| HORVU5Hr1G103060.1 | Barley | mitochondrion | 21.44 | 20.63 |
| HORVU5Hr1G093250.4 | Barley | cytosol | 20.13 | 20.44 |
| HORVU2Hr1G126570.1 | Barley | extracellular | 15.32 | 19.61 |
| HORVU5Hr1G011400.6 | Barley | mitochondrion | 17.72 | 18.08 |
| HORVU7Hr1G106600.4 | Barley | cytosol | 8.75 | 15.56 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G036460.1 | EnsemblPlantsGene:HORVU7Hr1G036460 | Gene3D:3.40.1090.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006629 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0016042 | GO:GO:0016787 | InterPro:Acyl_Trfase/lysoPLipase |
| InterPro:IPR002641 | InterPro:PNPLA_dom | PANTHER:PTHR32176 | PANTHER:PTHR32176:SF10 | PFAM:PF01734 | PFscan:PS51635 |
| SEG:seg | SUPFAM:SSF52151 | UniParc:UPI000B47B59A | UniProt:A0A287W1Q9 | MapMan:5.7.2.2.3 | : |
Description
Patatin [Source:UniProtKB/TrEMBL;Acc:A0A287W1Q9]
Coordinates
chrchr7H:-:84700862..84702674
Molecular Weight (calculated)
50275.1 Da
IEP (calculated)
6.928
GRAVY (calculated)
-0.222
Length
457 amino acids
Sequence
(BLAST)
(BLAST)
001: QEHKSHDHAP EILTYWSELA WSRFKLKALP LLAVARARAE QGTPRARLNM GSQADTTTTC PPSAQGRLIT VLSIDGGGIR GLIPSTILAC LESKLQELDG
101: PDARIADYFD VIAGTSTGAL VTSMLAAPGE NKRPLFEAKD INNFYLENGP KIFPQRRLGF LTPIANLFGA VKGPKYDGKF LHDKIKSLTN DVTVADTVTN
201: IIVPTFDIKY LQPVIFNTYE AKVDPLKNAH LSDICISTSA APTYFPAHYF ATHDPMGKLP DREYHLVDGG VAANNPTMAA MSMITKEVLR RNPDFSHGKP
301: AEYHRYLIIS LGTGTAKQAE KYTAPDCAKW GVLRWLYDGG FTPLIDIFSH ASADMVDIHA AILFQALHIE KNYLRIQDDS LTGHTSSVDI STKANMEALI
401: GIGNMLLKKK VARVNIDTGI YEPVDDEGTN EEALAHFAQK LSDERKLRLS QPTLNSQ
101: PDARIADYFD VIAGTSTGAL VTSMLAAPGE NKRPLFEAKD INNFYLENGP KIFPQRRLGF LTPIANLFGA VKGPKYDGKF LHDKIKSLTN DVTVADTVTN
201: IIVPTFDIKY LQPVIFNTYE AKVDPLKNAH LSDICISTSA APTYFPAHYF ATHDPMGKLP DREYHLVDGG VAANNPTMAA MSMITKEVLR RNPDFSHGKP
301: AEYHRYLIIS LGTGTAKQAE KYTAPDCAKW GVLRWLYDGG FTPLIDIFSH ASADMVDIHA AILFQALHIE KNYLRIQDDS LTGHTSSVDI STKANMEALI
401: GIGNMLLKKK VARVNIDTGI YEPVDDEGTN EEALAHFAQK LSDERKLRLS QPTLNSQ
001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI
Arabidopsis Description
PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.