Factsheet for VIT_18s0001g10870.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g10830.t01
VIT_18s0001g10850.t01
VIT_18s0001g10870.t01
VIT_18s0001g10900.t01
VIT_18s0001g10910.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26560.1	VIT_18s0001g10830.t01	AT2G26560.1	21798944
AT2G26560.1	VIT_18s0001g10850.t01	AT2G26560.1	21798944
AT2G26560.1	VIT_18s0001g10870.t01	AT2G26560.1	21798944
AT2G26560.1	VIT_18s0001g10900.t01	AT2G26560.1	21798944
AT2G26560.1	VIT_18s0001g10910.t01	AT2G26560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g10900.t01	Wine grape	cytosol	48.43	99.5
VIT_18s0001g10910.t01	Wine grape	cytosol	99.03	99.03
VIT_18s0001g10850.t01	Wine grape	cytosol	97.09	97.09
VIT_18s0001g10830.t01	Wine grape	mitochondrion, plasma membrane, plastid	93.95	84.35
HORVU5Hr1G069130.5	Barley	cytosol	67.8	69.14
TraesCS5D01G249800.1	Wheat	cytosol	67.31	68.64
VIT_18s0001g11010.t01	Wine grape	cytosol	67.07	68.23
VIT_18s0001g10880.t01	Wine grape	cytosol	67.07	68.23
TraesCS5A01G243200.1	Wheat	cytosol	66.83	68.15
VIT_18s0001g10940.t01	Wine grape	cytosol, peroxisome, plastid	66.83	67.98
Bra000578.1-P	Field mustard	cytosol	66.59	67.9
CDX83197	Canola	cytosol	66.83	67.81
CDY21469	Canola	cytosol, peroxisome, vacuole	66.83	67.81
GSMUA_Achr11P...	Banana	cytosol	55.45	67.75
VIT_18s0001g10950.t01	Wine grape	cytosol, peroxisome, plastid	66.59	67.73
Zm00001d005911_P001	Maize	cytosol	65.86	67.66
VIT_18s0001g10980.t01	Wine grape	cytosol, peroxisome, plastid	63.92	67.52
VIT_18s0001g10970.t01	Wine grape	cytosol, peroxisome, plastid	66.34	67.49
KXG35787	Sorghum	cytosol	64.16	67.43
AT2G26560.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	66.34	67.32
TraesCS5B01G241100.2	Wheat	cytosol	66.34	67.16
VIT_18s0001g10930.t01	Wine grape	cytosol	50.61	66.77
Os09t0462400-00	Rice	cytosol	54.96	66.37
VIT_07s0031g00860.t01	Wine grape	cytosol	65.38	66.18
KRH15338	Soybean	cytosol	62.71	63.48
KRH15334	Soybean	cytosol	62.71	63.48
VIT_00s0567g00050.t01	Wine grape	cytosol	32.45	62.91
VIT_00s0567g00060.t01	Wine grape	cytosol	56.66	62.57
VIT_07s0031g00850.t01	Wine grape	cytosol, peroxisome, plastid	60.77	62.44
VIT_07s0031g00870.t01	Wine grape	cytosol	61.26	62.16
VIT_18s0001g10920.t01	Wine grape	extracellular	65.38	61.93
KRH05709	Soybean	cytosol	61.02	61.76
HORVU4Hr1G050060.10	Barley	plastid	38.5	61.63
HORVU3Hr1G101170.1	Barley	mitochondrion, plastid	29.78	61.19
HORVU2Hr1G060260.1	Barley	plastid	40.19	60.36
KRH05708	Soybean	cytosol	54.48	59.68
GSMUA_Achr9P27010_001	Banana	cytosol	60.53	58.28
GSMUA_Achr7P12940_001	Banana	cytosol	63.68	55.25
HORVU4Hr1G019140.24	Barley	cytosol	28.81	54.84
VIT_00s0567g00040.t01	Wine grape	cytosol	21.07	53.7
VIT_07s0005g01860.t01	Wine grape	cytosol	38.98	42.37
VIT_07s0005g01890.t01	Wine grape	mitochondrion	38.98	42.26
VIT_07s0005g01880.t01	Wine grape	plastid	38.5	41.84
VIT_07s0005g01840.t01	Wine grape	cytosol, mitochondrion, plastid	38.74	37.74
VIT_07s0151g01130.t01	Wine grape	cytosol	25.18	27.01
VIT_13s0019g04200.t01	Wine grape	cytosol	28.81	25.98
VIT_10s0092g00150.t01	Wine grape	cytosol	25.42	24.59

Protein Annotations

EntrezGene:100266120	wikigene:100266120	EntrezGene:109121419	Gene3D:3.40.1090.10	MapMan:5.7.2.2.3	InterPro:Acyl_Trfase/lysoPLipase
ProteinID:CBI19548	ProteinID:CBI19548.3	UniProt:E0CP91	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824
GO:GO:0004620	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016020	GO:GO:0016042	GO:GO:0016787
GO:GO:0047372	InterPro:IPR002641	EntrezGene:LOC100266120	wikigene:LOC100266120	PFAM:PF01734	InterPro:PNPLA_dom
PFscan:PS51635	PANTHER:PTHR32176	PANTHER:PTHR32176:SF6	SUPFAM:SSF52151	UniParc:UPI00015C7832	ArrayExpress:VIT_18s0001g10870
EnsemblPlantsGene:VIT_18s0001g10870	EnsemblPlants:VIT_18s0001g10870.t01	RefSeq:XP_002282546	RefSeq:XP_002282546.1	RefSeq:XP_010664584.1	:

Description

Patatin [Source:UniProtKB/TrEMBL;Acc:E0CP91]

Coordinates

chr18:-:9147785..9149815

Molecular Weight (calculated)

45082.8 Da

IEP (calculated)

6.382

GRAVY (calculated)

-0.246

Length

413 amino acids

Sequence
(BLAST)

001: MGEGPKSPLQ PPTYGNLITI LSIDGGGIRG LIPGTVLGFL ESELQKLDGE DARISDYFDV IAGTSTGGLV TAMLTTPNEN TGRPLFSAKD IKDFYLDHCP
101: KIFPQHSHDP IPHVTKVVTA LSGPKYDGKY LHNLVKEKLG ETRLHQTLTN VVIPTFDIKR LQPTIFSTYQ VKSRPSLDAL LSDICIGTSA APTYLPAHYF
201: ETKDPAGRVR EFNLIDGGVA ANNPTLVAIG EVTKEIIRGS PDFFPIKPMD YGRFLVISLG TGSSKAEEKY NADEAAKWGV LGWLTSGGST PLVKVFTQAS
301: GDMIDLHLSE LFQALHSEKS YLRIQDDTLR GITSSVDIAT KENLDDLVKI GEELLKKRVS RVNLDTGIFE PSNHETNEEA LTSFARLLSQ EKQRRDTRSP
401: HGHAAASKGL VVV

Best Arabidopsis Sequence Match ( AT2G26560.1 )
(BLAST)

001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI

Arabidopsis Description

PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.