Factsheet for VIT_18s0001g11010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
vacuole 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g10980.t01	Wine grape	cytosol, peroxisome, plastid	93.1	96.68
VIT_18s0001g10950.t01	Wine grape	cytosol, peroxisome, plastid	93.84	93.84
VIT_18s0001g10970.t01	Wine grape	cytosol, peroxisome, plastid	93.6	93.6
VIT_18s0001g10940.t01	Wine grape	cytosol, peroxisome, plastid	93.1	93.1
VIT_18s0001g10880.t01	Wine grape	cytosol	88.67	88.67
VIT_18s0001g10920.t01	Wine grape	extracellular	86.45	80.5
Solyc04g079240.2.1	Tomato	nucleus	72.41	71.36
Solyc04g079250.2.1	Tomato	cytosol	71.18	71.36
Solyc04g079260.2.1	Tomato	cytosol	70.94	70.94
KRH51959	Soybean	nucleus	72.17	70.77
KRH15336	Soybean	cytosol	70.69	70.34
KRH05707	Soybean	cytosol	70.69	70.17
KRH05706	Soybean	cytosol, extracellular, nucleus	64.78	69.95
VIT_07s0031g00860.t01	Wine grape	cytosol	69.46	69.12
VIT_18s0001g10850.t01	Wine grape	cytosol	68.97	67.8
VIT_18s0001g10870.t01	Wine grape	cytosol	68.23	67.07
VIT_18s0001g10910.t01	Wine grape	cytosol	67.98	66.83
VIT_07s0031g00850.t01	Wine grape	cytosol, peroxisome, plastid	64.04	64.68
VIT_07s0031g00870.t01	Wine grape	cytosol	64.29	64.13
KRH15337	Soybean	cytosol	25.86	63.64
VIT_18s0001g10900.t01	Wine grape	cytosol	30.79	62.19
VIT_18s0001g10930.t01	Wine grape	cytosol	47.78	61.98
VIT_00s0567g00050.t01	Wine grape	cytosol	32.51	61.97
VIT_00s0567g00060.t01	Wine grape	cytosol	56.9	61.76
VIT_18s0001g10830.t01	Wine grape	mitochondrion, plasma membrane, plastid	67.98	60.0
GSMUA_Achr3P06850_001	Banana	cytosol	58.62	58.33
VIT_00s0567g00040.t01	Wine grape	cytosol	21.67	54.32
VIT_07s0005g01880.t01	Wine grape	plastid	40.89	43.68
VIT_07s0005g01890.t01	Wine grape	mitochondrion	39.9	42.52
VIT_07s0005g01860.t01	Wine grape	cytosol	39.41	42.11
VIT_07s0005g01840.t01	Wine grape	cytosol, mitochondrion, plastid	40.89	39.15
VIT_13s0019g04200.t01	Wine grape	cytosol	30.54	27.07
VIT_07s0151g01130.t01	Wine grape	cytosol	25.62	27.01
VIT_10s0092g00150.t01	Wine grape	cytosol	27.59	26.23

Protein Annotations

EntrezGene:100252227	wikigene:100252227	EntrezGene:100264244	wikigene:100264244	Gene3D:3.40.1090.10	MapMan:5.7.2.2.3
EMBL:AM487232	InterPro:Acyl_Trfase/lysoPLipase	ProteinID:CAN68798	ProteinID:CAN68798.1	ProteinID:CCB45867	ProteinID:CCB45867.1
UniProt:F6H017	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0004620	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0047372	InterPro:IPR002641
EntrezGene:LOC100252227	wikigene:LOC100252227	EntrezGene:LOC100264244	wikigene:LOC100264244	PFAM:PF01734	InterPro:PNPLA_dom
PFscan:PS51635	PANTHER:PTHR32176	PANTHER:PTHR32176:SF6	SUPFAM:SSF52151	UniParc:UPI00015C775A	ArrayExpress:VIT_18s0001g11010
EnsemblPlantsGene:VIT_18s0001g11010	EnsemblPlants:VIT_18s0001g11010.t01	RefSeq:XP_002282366	RefSeq:XP_002282366.2	RefSeq:XP_002282391	RefSeq:XP_002282391.2

Description

Patatin [Source:UniProtKB/TrEMBL;Acc:F6H017]

Coordinates

chr18:-:9330426..9332577

Molecular Weight (calculated)

44775.0 Da

IEP (calculated)

6.806

GRAVY (calculated)

-0.210

Length

406 amino acids

Sequence
(BLAST)

001: MEKSLVPQIQ PPTYGSLVTI LSIDGGGIRG IIPATILALL ESQLQELDGD DARIADYFDV IAGTSTGGLV TAMLTAPDDQ KRPLFAAKEI MPFYLEHGPK
101: IFPQTRGIFG WIMSIVRSLI GPKYDGKYLK RITKEKLGGT RLHETLTSVV IPTFDIKSLQ PTIFSTYEVK RSPCLDAPLA DICIGSSAAP TYFPGHYFKN
201: QDKEGKTQEF NLIDGGVAAN NPALVAISQV TKQVFDKNPD FFPIKPMDFG RFLVISIGTG SPKSEQKYNA KMASKWGVLG WLLHGGSTPL VDVFMQASAD
301: MVDFHISMVF QALHSEDNYL RIQDDTLRGK DASVDVATEE NLDNLVKIGE RLLKKPVSRV NLETGLSEPV ENGGTNEEAL KRFAKLLSDE KRLRETRLPN
401: PKKDLK

Best Arabidopsis Sequence Match ( AT4G37050.1 )
(BLAST)

001: MDTERGSISS SEISRTAHLQ DRTVACLPPS YGQLVTILSI DGGGIRGIIP GTILAYLESQ LQELDGEEAR LVDYFDVISG TSTGGLIVAM LTAQDQSGGH
101: SRNSNRPLFE AKEIVPFYLK HSPKIFPQPR GIFCGWGETI VRLVGGPKFN GKYLHDLVEG FLGDTKLTQS LTNVVIPCFD IKKLQPVIFS SYQAVNNQAM
201: NAKLSDICIS TSAAPTFFPA HRFTNEDSEG IKHEFNLIDG GIAANNPTLC AIAEVTKQII KKNPVMGDIS PLDFTRFLVI SIGTGSIRNQ EKYNAKMASK
301: WGLMCWVFES GSTPILDCYS EAIHDMVDYQ SSVVFQALRS EKNYLRIDDD SLKGDLGSVD ISTEKNMEGL VEVGEALLKK RVSRVNLESG HYQPISENVT
401: NEEALKRFAK VLSEERKLRE SRSPKLKI

Arabidopsis Description

PLP3Patatin-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O23181]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.