Factsheet for VIT_18s0001g10940.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 2
vacuole 2
mitochondrion 2
plasma membrane 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g10950.t01	Wine grape	cytosol, peroxisome, plastid	95.32	95.32
VIT_18s0001g10970.t01	Wine grape	cytosol, peroxisome, plastid	95.07	95.07
VIT_18s0001g11010.t01	Wine grape	cytosol	93.1	93.1
VIT_18s0001g10980.t01	Wine grape	cytosol, peroxisome, plastid	88.18	91.56
VIT_18s0001g10880.t01	Wine grape	cytosol	90.15	90.15
VIT_18s0001g10920.t01	Wine grape	extracellular	87.68	81.65
Solyc04g079240.2.1	Tomato	nucleus	71.67	70.63
KRH51959	Soybean	nucleus	71.43	70.05
Solyc04g079260.2.1	Tomato	cytosol	69.46	69.46
Solyc04g079250.2.1	Tomato	cytosol	68.97	69.14
KRH05707	Soybean	cytosol	69.46	68.95
KRH05706	Soybean	cytosol, extracellular, nucleus	63.79	68.88
KRH15336	Soybean	cytosol	69.21	68.87
VIT_07s0031g00860.t01	Wine grape	cytosol	67.98	67.65
VIT_18s0001g10850.t01	Wine grape	cytosol	68.23	67.07
VIT_18s0001g10870.t01	Wine grape	cytosol	67.98	66.83
VIT_18s0001g10910.t01	Wine grape	cytosol	67.73	66.59
VIT_07s0031g00850.t01	Wine grape	cytosol, peroxisome, plastid	63.79	64.43
KRH15337	Soybean	cytosol	25.86	63.64
VIT_07s0031g00870.t01	Wine grape	cytosol	63.3	63.15
VIT_00s0567g00050.t01	Wine grape	cytosol	33.0	62.91
VIT_18s0001g10900.t01	Wine grape	cytosol	31.03	62.69
VIT_18s0001g10930.t01	Wine grape	cytosol	47.29	61.34
VIT_00s0567g00060.t01	Wine grape	cytosol	56.16	60.96
VIT_18s0001g10830.t01	Wine grape	mitochondrion, plasma membrane, plastid	67.98	60.0
GSMUA_Achr3P06850_001	Banana	cytosol	59.61	59.31
VIT_00s0567g00040.t01	Wine grape	cytosol	20.94	52.47
VIT_07s0005g01880.t01	Wine grape	plastid	39.41	42.11
VIT_07s0005g01890.t01	Wine grape	mitochondrion	38.92	41.47
VIT_07s0005g01860.t01	Wine grape	cytosol	38.42	41.05
VIT_07s0005g01840.t01	Wine grape	cytosol, mitochondrion, plastid	39.16	37.5
VIT_13s0019g04200.t01	Wine grape	cytosol	31.28	27.73
VIT_07s0151g01130.t01	Wine grape	cytosol	26.11	27.53
VIT_10s0092g00150.t01	Wine grape	cytosol	27.83	26.46

Protein Annotations

EntrezGene:100255738	wikigene:100255738	Gene3D:3.40.1090.10	MapMan:5.7.2.2.3	InterPro:Acyl_Trfase/lysoPLipase	ProteinID:CBI19555
ProteinID:CBI19555.3	UniProt:E0CP98	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0004620
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0047372
InterPro:IPR002641	EntrezGene:LOC100255738	wikigene:LOC100255738	PFAM:PF01734	InterPro:PNPLA_dom	PFscan:PS51635
PANTHER:PTHR32176	PANTHER:PTHR32176:SF6	SUPFAM:SSF52151	UniParc:UPI000198542E	ArrayExpress:VIT_18s0001g10940	EnsemblPlantsGene:VIT_18s0001g10940
EnsemblPlants:VIT_18s0001g10940.t01	RefSeq:XP_002282440	RefSeq:XP_002282440.1	:	:	:

Description

Patatin [Source:UniProtKB/TrEMBL;Acc:E0CP98]

Coordinates

chr18:-:9254405..9256571

Molecular Weight (calculated)

44890.1 Da

IEP (calculated)

6.276

GRAVY (calculated)

-0.184

Length

406 amino acids

Sequence
(BLAST)

001: MEKSLLPQVQ PPTYGNLVTI LSIDGGGIRG IIPATILACL ESHLQELDGD DARIADYFDV IAGTSTGGLV AAMLTAPDDQ KRPLFAAKDI RPFYLEHGPK
101: IFPQIRGIFG WIMSILRSIV GPKYDGKYLK SLIKEKLGGT WLHETLTSVV IPTFDIKSLQ PTIFSTYEVK RSPSLDAPLA DICIGSSAAP TYFPAYYFKN
201: QDKEGKTQEF DLIDGGVAAN NPALVAITQV TKQVFDRNPD FFPIKYMDFG RFLVISIGTG SPKSEQKYNA KMAAKWGVLG WLLHGGSTPL VDVFMQASAD
301: MVDFHISMVF QALHSEDNYL RIQDDTLRGK DASVDVTTEE NLDNLVKIGE RLLKKPVSRV NLETGLSEPV ENGGTNEEAL KRFAKLLSDE KRLRETRSPN
401: PMKNLK

Best Arabidopsis Sequence Match ( AT2G26560.1 )
(BLAST)

001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI

Arabidopsis Description

PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.