Factsheet for Solyc04g079240.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
vacuole 2
mitochondrion 3
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g079210.2.1	Tomato	cytosol	28.64	72.84
VIT_18s0001g11010.t01	Wine grape	cytosol	71.36	72.41
VIT_18s0001g10950.t01	Wine grape	cytosol, peroxisome, plastid	70.87	71.92
VIT_18s0001g10970.t01	Wine grape	cytosol, peroxisome, plastid	70.63	71.67
VIT_18s0001g10940.t01	Wine grape	cytosol, peroxisome, plastid	70.63	71.67
VIT_18s0001g10880.t01	Wine grape	cytosol	70.63	71.67
VIT_18s0001g10980.t01	Wine grape	cytosol, peroxisome, plastid	67.72	71.36
Solyc04g079250.2.1	Tomato	cytosol	68.69	69.88
KRH51959	Soybean	nucleus	69.9	69.57
KRH15336	Soybean	cytosol	68.69	69.36
KRH05707	Soybean	cytosol	68.69	69.19
KRH05706	Soybean	cytosol, extracellular, nucleus	63.11	69.15
Solyc04g079260.2.1	Tomato	cytosol	66.26	67.24
Solyc04g079220.1.1	Tomato	cytosol	12.14	66.67
Solyc02g090630.2.1	Tomato	cytosol	62.38	65.06
VIT_18s0001g10920.t01	Wine grape	extracellular	68.45	64.68
KRH15337	Soybean	cytosol	25.49	63.64
GSMUA_Achr3P06850_001	Banana	cytosol	59.47	60.05
Solyc02g090490.2.1	Tomato	extracellular	53.4	53.4
Solyc03g044710.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	52.91	53.17
Solyc02g065090.2.1	Tomato	nucleus	52.91	51.9
Solyc02g065100.1.1	Tomato	endoplasmic reticulum, extracellular	50.73	50.85
Solyc08g006860.2.1	Tomato	extracellular	44.9	48.3
Solyc08g006850.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	42.72	46.68
Solyc02g090660.1.1	Tomato	cytosol, peroxisome, plastid	31.07	46.38
Solyc10g080690.1.1	Tomato	cytosol	27.67	26.39
Solyc05g056030.2.1	Tomato	cytosol	28.88	25.54
Solyc09g065240.2.1	Tomato	cytosol	23.3	25.07
Solyc10g078530.1.1	Tomato	cytosol	25.97	24.6

Protein Annotations

Gene3D:3.40.1090.10	MapMan:5.7.2.2.3	InterPro:Acyl_Trfase/lysoPLipase	GO:GO:0003674	GO:GO:0003824	GO:GO:0004620
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0016020	GO:GO:0016042	GO:GO:0016787	GO:GO:0047372
InterPro:IPR002641	UniProt:K4BV08	PFAM:PF01734	InterPro:PNPLA_dom	PFscan:PS51635	PANTHER:PTHR32176
PANTHER:PTHR32176:SF6	SUPFAM:SSF52151	EnsemblPlantsGene:Solyc04g079240.2	EnsemblPlants:Solyc04g079240.2.1	UniParc:UPI0002766FDF	SEG:seg

Description

Patatin [Source:UniProtKB/TrEMBL;Acc:K4BV08]

Coordinates

chr4:-:63757430..63760922

Molecular Weight (calculated)

45465.7 Da

IEP (calculated)

7.028

GRAVY (calculated)

-0.233

Length

412 amino acids

Sequence
(BLAST)

001: MKNVMLSSSG SLKLQPPTYG KLITILSIDG GGIRGIIPAI ILEYLESQLQ ELDGEDARLA DYFDIIAGTS TGGLVTAMLT APNKDKRPIF AAKDIKPFYL
101: EHGPKIFPQK GMLFFGSIIK TLKSLIGPKY NGKYLHQVIK EKLGETHLHE TLTNVVIPTF DIKNLQPTIF STFEAKEKPL MDAKLSDICI STSGAPTYLP
201: AHYFKTQDRD DNFHEFNLVD GGVAANNPAL VATSQVTKQI MAGNPDFFPI KPIDYGRFLV ISVGTGSAKV EQKYNAKIAS KWGILGWLLN GGSTPIVDVF
301: TQASGDMVDF HISVVFQALH SEENYLRVQD DTLSGTDSSV DISTKENMNK LVEIGTNLLK KPVSRVNLQT GLFEECKKDD TNEETLKRFA KLLSEEKRLR
401: DSKSPHTSKT SE

Best Arabidopsis Sequence Match ( AT2G26560.1 )
(BLAST)

001: MQMDSPKSPL QPPTYGNLVT ILSIDGGGIR GLIPAVILGF LESELQKLDG EEARLADYFD VIAGTSTGGL VTAMLTAPNK EGRPLFAASE IKDFYLEQCP
101: KIFPQDHFPF SAAKKLVKSL TGPKYDGKYL HQLIHAKLGD TKLSQTLTNV VIPTFDIKHL QPTIFSSYEV KNHPLKDATL ADIAISTSAA PTYLPAHFFK
201: VEDLNGNAKE YNLIDGGVAA NNPALLAIGE VTNEISGGSS DFFPIRPNDY GRFLVLSLGT GNHKAEEKFN AKEVAGWGLL NWLTHDNSTP IIDAFSQASS
301: DMVDFHLSAV FRALHSEANY IRIQDDTLTG DAASVDIATV ENLDILAKTG DELLKKPVAR VNLDSGCNEN AYETTNEHAL IKLAGILSKE KKIRDIRSPH
401: AKAPIRI

Arabidopsis Description

PLP2Patatin-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48723]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.