Factsheet for Bra000125.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 2
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07662	Canola	cytosol	98.34	99.79
Bra005058.1-P	Field mustard	cytosol	90.06	89.32
AT2G39220.1	Thale cress	cytosol	90.68	87.78
Bra003202.1-P	Field mustard	mitochondrion	74.12	75.21
Bra007119.1-P	Field mustard	mitochondrion	76.4	74.4
VIT_13s0019g04200.t01	Wine grape	cytosol	67.08	70.74
KRH34879	Soybean	cytosol	67.08	69.98
Solyc05g056030.2.1	Tomato	cytosol	63.77	66.09
PGSC0003DMT400060317	Potato	cytosol	63.56	65.88
GSMUA_Achr8P18860_001	Banana	cytosol	42.65	62.05
GSMUA_Achr2P12330_001	Banana	cytosol	50.72	61.25
GSMUA_Achr5P03830_001	Banana	cytosol	54.87	61.06
GSMUA_Achr5P18500_001	Banana	cytosol	48.24	60.05
KRG91895	Soybean	cytosol, extracellular, mitochondrion, plastid	67.49	59.93
GSMUA_Achr11P...	Banana	mitochondrion	34.16	57.29
EER95163	Sorghum	cytosol	51.14	53.7
Zm00001d028482_P001	Maize	cytosol	50.72	53.26
TraesCS4B01G221000.1	Wheat	cytosol	49.07	51.52
TraesCS4D01G221300.1	Wheat	cytosol	48.86	51.42
Os03t0254400-01	Rice	cytosol	49.69	51.17
TraesCS4A01G083200.1	Wheat	cytosol	48.45	50.65
HORVU0Hr1G008670.3	Barley	cytosol	35.82	42.82
Bra007735.1-P	Field mustard	cytosol	33.33	41.82
Bra040428.1-P	Field mustard	cytosol	32.92	41.09
Bra011730.1-P	Field mustard	cytosol	24.43	28.92
Bra011732.1-P	Field mustard	cytosol	22.36	28.27
Bra017799.1-P	Field mustard	cytosol	24.02	28.16
Bra011731.1-P	Field mustard	cytosol, peroxisome, plastid	23.6	28.15
Bra017798.1-P	Field mustard	cytosol	23.6	27.94
Bra000578.1-P	Field mustard	cytosol	22.98	27.41

Protein Annotations

EnsemblPlants:Bra000125.1	EnsemblPlants:Bra000125.1-P	EnsemblPlantsGene:Bra000125	Gene3D:3.40.1090.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0016042	GO:GO:0016787
InterPro:Acyl_Trfase/lysoPLipase	InterPro:IPR002641	InterPro:PNPLA_dom	PANTHER:PTHR32241	PFAM:PF01734	PFscan:PS51635
SUPFAM:SSF52151	UniParc:UPI00025401DD	UniProt:M4C7E7	MapMan:5.7.2.2.4	:	:

Description

AT2G39220 (E=8e-249) PLP6, PLA IIB | PLP6 (PATATIN-LIKE PROTEIN 6); nutrient reservoir

Coordinates

chrA03:-:9423907..9426069

Molecular Weight (calculated)

53046.3 Da

IEP (calculated)

7.689

GRAVY (calculated)

-0.353

Length

483 amino acids

Sequence
(BLAST)

001: MQRVHNKAPS ATVKHHLIKQ SNNGGATAAA EMQEPSIETD KLSYEIFSIL ESKFLFGYDD DPKLMESRSR DPSPEQETSP TAVNGVVPGS IKNQRGKVCV
101: LSIDGGGMRG IIPGKALAYL EQALKLKSGD PNARIADYFD VASGSGVGGI FTAMLFASND GDRPIFKADD TWRFLAKNGK SFYKSQPGKI LNRVMKTGSG
201: SKLEKSMKES FAELTLKDTL KPVLIPCYDL TSSAPFLFSR ADALETDGYD FKLWEVCRAT WAEPGVFEPV EMRSVDGKTR CVAVDGGLAM SNPTSAAITH
301: VLHNKQEFPF VRGVEDLLVL SLGTGQLVDV KYECDKVMKW KAKQWARPAV RISADGAADT VDQAVSMAFG QCRRSNYVRI QADGSSFGPC KPNVDTDASP
401: SNVNMLVGVA EEMLKQKNVE SVLFGGKKIN EESNFEKLDW LAGELVLEHQ RRSCRIAPTV AFKQSTDRRS DQKTIFKDID CMF

Best Arabidopsis Sequence Match ( AT2G39220.1 )
(BLAST)

001: MLTTMQRVHN KPIDSIGGFK HLVKQSNGGD GGVTATDMQE PSIETDKLSY EIFSILESKF LFGYDDDLKL MESRSRDPSP EQETASPAMV EALNGVVPGT
101: VKNQRGKVCV LSIDSGGMRG IIPGKALAYL EHALKSKSGD PNARIADYFD VASGSGIGGI FTAMLFASSD GNRPIFKAED TWRFLAMKGK SFYNKSPPGI
201: LNRVMKTGSG GSGGSGSKLE KAMKESFEEL TLKDTLKPVL IPCYDLTSSA PFLFSRADAL ETDGYDFKLW EVCRATWAEP GVFEPVEMRS VDGKTRCVAV
301: DGGLAMSNPT AAAITHVLHN KQEFPFVRGV EDLLVLSLGT GQLVDVKYDC DKVMKWKAKH WARPAVRISA DGAADTVDQA VSMAFGQCRR SNYVRIQANG
401: SSFGPCKPNI DTDASPSNVN MLVGVAEEML KQKNAESVLF GGKKINEESN YEKLDWLAGE LVLEHQRRSC RIAPTVAFKQ SGDRRVDQQT IFKDIDCMF

Arabidopsis Description

PLP6Patatin-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O80959]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.