CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER97813

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79910.1	EER97813	AT2G39760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014521_P001	Maize	mitochondrion	84.71	86.25
Zm00001d051744_P001	Maize	nucleus	52.1	81.47
Zm00001d036913_P001	Maize	cytosol	54.65	70.21
Os06t0687000-00	Rice	mitochondrion	56.82	61.18
TraesCS7A01G445700.1	Wheat	cytosol, mitochondrion, nucleus	50.32	55.71
TraesCS7D01G433700.1	Wheat	cytosol, mitochondrion, nucleus	51.08	55.23
TraesCS7B01G345200.1	Wheat	cytosol, nucleus, plastid	50.06	54.06
HORVU7Hr1G101130.3	Barley	cytosol, nucleus	49.81	53.86
GSMUA_Achr5P23530_001	Banana	nucleus	12.23	53.63
KRH06586	Soybean	cytosol	3.95	50.82
EES04550	Sorghum	nucleus	39.24	45.1
KRG89505	Soybean	mitochondrion	9.94	41.27
GSMUA_Achr6P29590_001	Banana	cytosol	22.93	39.3
CDX87282	Canola	cytosol	9.68	37.62
PGSC0003DMT400042551	Potato	nucleus	14.39	36.57
Solyc06g066690.2.1	Tomato	nucleus	14.01	35.6
VIT_09s0002g04580.t01	Wine grape	nucleus	22.04	34.53
CDY52976	Canola	mitochondrion	13.5	34.3
CDX87899	Canola	nucleus	11.97	34.06
GSMUA_Achr9P11280_001	Banana	cytosol, mitochondrion, nucleus, plastid	28.28	32.99
AT1G79910.1	Thale cress	nucleus	15.8	32.55
GSMUA_Achr8P15690_001	Banana	mitochondrion	27.39	32.09
CDY37561	Canola	nucleus	15.29	31.83
CDY41108	Canola	nucleus	15.29	31.75
Bra008502.1-P	Field mustard	nucleus	15.29	31.66
KRH23458	Soybean	mitochondrion	16.05	31.58
CDY49898	Canola	mitochondrion	10.96	31.39
Solyc03g120120.2.1	Tomato	nucleus	18.85	31.09
AT1G52315.1	Thale cress	mitochondrion	13.5	30.55
KRH44367	Soybean	mitochondrion	12.48	30.43
PGSC0003DMT400014529	Potato	nucleus	17.32	30.22
CDX87900	Canola	mitochondrion	10.96	29.86
CDY49897	Canola	nucleus	10.19	29.85
Bra018962.1-P	Field mustard	extracellular, vacuole	13.5	29.78
KRH47048	Soybean	mitochondrion	14.39	29.58
Bra035204.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	6.5	29.48
Solyc12g043150.1.1	Tomato	nucleus	19.11	29.41
EER92528	Sorghum	mitochondrion	6.5	27.42
PGSC0003DMT400092826	Potato	nucleus	14.01	25.88
VIT_11s0016g04010.t01	Wine grape	nucleus	21.91	23.69
CDX68838	Canola	nucleus	18.98	23.65
CDX75238	Canola	nucleus	18.98	23.61
KRH48400	Soybean	mitochondrion, nucleus	21.27	22.72
KRH39280	Soybean	mitochondrion, nucleus	21.15	22.59
Solyc07g022860.2.1	Tomato	nucleus	15.16	21.6
KRH60286	Soybean	nucleus	21.02	21.54
PGSC0003DMT400022180	Potato	nucleus	14.9	21.2
KRH41578	Soybean	nucleus	20.89	20.55
KXG33152	Sorghum	mitochondrion	8.28	20.25
AT4G32350.1	Thale cress	nucleus	18.85	20.22
OQU90964	Sorghum	mitochondrion	4.2	19.76
KXG19452	Sorghum	mitochondrion	6.88	19.64
EER99304	Sorghum	plastid	10.7	17.5
Bra030391.1-P	Field mustard	nucleus	10.57	16.6
EER93588	Sorghum	mitochondrion	6.88	15.79
KXG24567	Sorghum	cytosol, plastid	9.94	15.12
EER92527	Sorghum	mitochondrion, plastid	9.04	13.25
EES03498	Sorghum	nucleus, plastid	11.72	7.44

Protein Annotations

EnsemblPlants:KXG20673	EnsemblPlantsGene:SORBI_3010G237200	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	ncoils:Coil	PANTHER:PTHR12161	PANTHER:PTHR12161:SF40	PFAM:PF03398	ProteinID:KXG20673
ProteinID:KXG20673.1	SEG:seg	UniParc:UPI0007F2816F	UniProt:A0A194YL42	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr10:-:57987171..57991318

Molecular Weight (calculated)

88557.6 Da

IEP (calculated)

8.706

GRAVY (calculated)

-0.964

Length

785 amino acids

Sequence
(BLAST)

001: MFDSLLNSKF YNKCKHAFKC IRTRMAPIRR KKHAMIRFLK KDVADLLANG LDTHAFGRMD GLIVELNHAS CYDMIEGFCD YIGKQLGSLQ KQRECPPEFR
101: EAVSTLIFAA ARYPDLPELC DLRHIFTERY GNFVEHFVNR EFIWKLDSTE FTNEERFQVM QSVAEELSVS FDAKELQLKL WATPETEHDM VEKGSRKPAE
201: LSMPLSNKQR CVKDAPYEEQ EDILEKSSRK PAELAMPLFD KTKCEGDAPC ERKNKDMLEN YSIKPVELAT ASSNKQKVTE DVPCKRNCDA EPAYHTEKVE
301: IQLIQKDIQA VADAHHTIDE HSRKQQPDVS DEKEDLQKPV SPVDTNRRNT QKDVQKLNRR AVRPLEKELM EAVELDLNGL PKNGFGAVKF PETDGNKSVQ
401: LNVKPNEAVR DYHIEKENNK VLHARMPGGP EHNGRHADSG LRVQRPDNQG RPVSPLSGNT RNKAPYTKRN VANMKNPTEK QANSGFLHDK PQHLADLGYP
501: VQKGQGVPER AGTMLPPYVK PKSNMQPVND DPEKKTPSGY SKPNIPGQTD HLENKDVLRP VSVRRRTAKL PAPVDTYVEV PNNEKVTSQT PKSHRNHSSR
601: QNGAKYDQNR KCNGTDDVGR GTNAQITPGS QSKHIGRRNG TLNHINDYGR LMQRRQPEAD ETAIDFGNLL PQNANGQRRH NSGHNGDLDE EDRMMDKLLM
701: HYSKKKGSDP TNNEGHIDAV QKVSLHPPGR AISLPPESVG PGEDAKVPAR STSLQPDGPK SAHVHPKMPD FDELAARVKA LRKAA

Best Arabidopsis Sequence Match ( AT1G79910.1 )
(BLAST)

001: MFDGLFKPKF YTKCKSLVKI TKTRVDTVKR KKNSVCKYLK NDIVDLLKNS LDYNAYGRAE GLIEEKRRLA CYEFLEQFCN CVASNVSLLQ KSIRCPDECR
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8L402]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.