Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68838 | Canola | nucleus | 62.84 | 73.02 |
| CDX75238 | Canola | nucleus | 62.7 | 72.74 |
| KRH06586 | Soybean | cytosol | 5.6 | 67.21 |
| GSMUA_Achr5P23530_001 | Banana | nucleus | 9.56 | 39.11 |
| KRH48400 | Soybean | mitochondrion, nucleus | 33.47 | 33.33 |
| KRH39280 | Soybean | mitochondrion, nucleus | 33.47 | 33.33 |
| VIT_11s0016g04010.t01 | Wine grape | nucleus | 32.79 | 33.06 |
| AT1G79910.1 | Thale cress | nucleus | 15.98 | 30.71 |
| AT1G52315.1 | Thale cress | mitochondrion | 14.34 | 30.26 |
| KRH60286 | Soybean | nucleus | 30.87 | 29.5 |
| PGSC0003DMT400022180 | Potato | nucleus | 21.72 | 28.8 |
| Solyc07g022860.2.1 | Tomato | nucleus | 21.17 | 28.13 |
| KRH41578 | Soybean | nucleus | 30.46 | 27.94 |
| GSMUA_Achr6P29590_001 | Banana | cytosol | 17.35 | 27.73 |
| EES04550 | Sorghum | nucleus | 21.99 | 23.57 |
| TraesCS6A01G133000.1 | Wheat | cytosol, nucleus, plastid | 22.68 | 23.22 |
| Zm00001d053852_P001 | Maize | nucleus | 21.72 | 23.21 |
| TraesCS6D01G122600.1 | Wheat | cytosol, nucleus, plastid | 22.54 | 23.08 |
| TraesCS6B01G161300.1 | Wheat | cytosol, nucleus, plastid | 22.27 | 22.86 |
| HORVU6Hr1G025460.3 | Barley | nucleus | 22.4 | 22.28 |
| Os02t0159200-01 | Rice | nucleus | 19.95 | 21.63 |
| Os06t0687000-00 | Rice | mitochondrion | 21.31 | 21.4 |
| AT2G14830.1 | Thale cress | mitochondrion | 11.07 | 21.09 |
| TraesCS7A01G445700.1 | Wheat | cytosol, mitochondrion, nucleus | 20.36 | 21.02 |
| TraesCS7B01G345200.1 | Wheat | cytosol, nucleus, plastid | 20.49 | 20.63 |
| TraesCS7D01G433700.1 | Wheat | cytosol, mitochondrion, nucleus | 20.36 | 20.52 |
| HORVU7Hr1G101130.3 | Barley | cytosol, nucleus | 19.95 | 20.11 |
| AT3G15490.1 | Thale cress | mitochondrion, nucleus | 5.74 | 19.91 |
| GSMUA_Achr8P15690_001 | Banana | mitochondrion | 18.03 | 19.7 |
| GSMUA_Achr9P11280_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 17.9 | 19.47 |
| AT4G35730.1 | Thale cress | plastid | 12.16 | 19.1 |
| KXG20673 | Sorghum | cytosol, nucleus, plastid | 20.22 | 18.85 |
| Zm00001d014521_P001 | Maize | mitochondrion | 19.54 | 18.55 |
| AT1G25420.1 | Thale cress | mitochondrion | 7.51 | 17.03 |
| AT1G13340.1 | Thale cress | mitochondrion | 7.92 | 14.18 |
| AT1G34220.1 | Thale cress | nucleus | 11.75 | 13.25 |
| AT1G51900.1 | Thale cress | mitochondrion | 11.75 | 11.11 |
| Zm00001d036913_P001 | Maize | cytosol | 7.65 | 9.17 |
| AT2G19710.1 | Thale cress | mitochondrion, nucleus | 11.07 | 8.64 |
| Zm00001d051744_P001 | Maize | nucleus | 5.33 | 7.77 |
| AT4G29440.1 | Thale cress | mitochondrion | 11.2 | 7.52 |
Protein Annotations
| Gene3D:1.20.1260.60 | MapMan:35.2 | EntrezGene:829369 | ProteinID:AEE86045.1 | ProteinID:ANM66510.1 | ArrayExpress:AT4G32350 |
| EnsemblPlantsGene:AT4G32350 | RefSeq:AT4G32350 | TAIR:AT4G32350 | RefSeq:AT4G32350-TAIR-G | EnsemblPlants:AT4G32350.1 | TAIR:AT4G32350.1 |
| EMBL:AY080684 | EMBL:AY122956 | Unigene:At.31672 | GO:GO:0003674 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0015031 | InterPro:Ist1 | RefSeq:NP_001328401.1 | RefSeq:NP_194961.2 | PFAM:PF03398 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF29 | UniProt:Q8RXT2 | UniParc:UPI00000A920E | SEG:seg |
Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8RXT2]
Coordinates
chr4:+:15617361..15621062
Molecular Weight (calculated)
83979.3 Da
IEP (calculated)
9.552
GRAVY (calculated)
-1.152
Length
732 amino acids
Sequence
(BLAST)
(BLAST)
001: MFDGFLGRGF APKGKPLIKL TKNRIDVLRR KRNATIKFLK RDLADLIING HDYNAFSRAG GLLDELRYLW SLDFVEQTCD FVYKQLSTMQ KTPECPEDCR
101: EAISSLMFAA SGFSELPELR ELRQMFHEKY TDSLALFVNQ ELVENMSSKP FSMEKKVKLM EDVALEFSIR WDSKDFEKRI VRQNSISVME TPKSTNDKYK
201: PVDRNMALPK REEFEGSENG VSLNRKTAEA SERRDPLFQS DKESYQNGLR GNQRGLTYKE RSENVLHASR SESKDNKAER KEFYLHSKQN PAREKHQPIF
301: NEGDTIVMKV NYGNLGQGNG HRPGVVDAHK KTEFVASERK EFYSQSKQEP SRERHQPIFN DGDTIVMKVK HENHVQGNGH KNGVVDLHKK IEVNASEKLK
401: SSSSKRADKL VIGFKQESFF QGYKHEKNEE HAHQKVEDST SRPPKPNSKS KRAESINPGS RHHNDRESKE NAVLVGKSTE EDPSGDNVKG GEYEYDHANP
501: ARKVEERETE RMKSPFYKSL PPPYVKKSIA KARHEKAEAL DNPKARFDGE EGNHPDNGKN VYGAERRNGA GHHEVNDIDN ASLKRQTNRR KHIVESGGDD
601: HISSRRRENS RKGLQVLIDE DEKDSEEKMM DKLLMHYSKK PSSYEKDNVQ EESKSRRTHL KKGESDEEMM IHQPARSRSL PAEQLAGPSE PAKTFARAAS
701: FQPERSSEAK HVHPKLPNYD DLAARFAELK GR
101: EAISSLMFAA SGFSELPELR ELRQMFHEKY TDSLALFVNQ ELVENMSSKP FSMEKKVKLM EDVALEFSIR WDSKDFEKRI VRQNSISVME TPKSTNDKYK
201: PVDRNMALPK REEFEGSENG VSLNRKTAEA SERRDPLFQS DKESYQNGLR GNQRGLTYKE RSENVLHASR SESKDNKAER KEFYLHSKQN PAREKHQPIF
301: NEGDTIVMKV NYGNLGQGNG HRPGVVDAHK KTEFVASERK EFYSQSKQEP SRERHQPIFN DGDTIVMKVK HENHVQGNGH KNGVVDLHKK IEVNASEKLK
401: SSSSKRADKL VIGFKQESFF QGYKHEKNEE HAHQKVEDST SRPPKPNSKS KRAESINPGS RHHNDRESKE NAVLVGKSTE EDPSGDNVKG GEYEYDHANP
501: ARKVEERETE RMKSPFYKSL PPPYVKKSIA KARHEKAEAL DNPKARFDGE EGNHPDNGKN VYGAERRNGA GHHEVNDIDN ASLKRQTNRR KHIVESGGDD
601: HISSRRRENS RKGLQVLIDE DEKDSEEKMM DKLLMHYSKK PSSYEKDNVQ EESKSRRTHL KKGESDEEMM IHQPARSRSL PAEQLAGPSE PAKTFARAAS
701: FQPERSSEAK HVHPKLPNYD DLAARFAELK GR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.