Factsheet for AT1G13340.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21093	Canola	mitochondrion	78.73	81.52
CDY50176	Canola	mitochondrion	77.26	80.2
CDY19375	Canola	mitochondrion	76.04	76.23
Bra019826.1-P	Field mustard	mitochondrion	77.26	63.97
KRH75395	Soybean	mitochondrion	44.25	44.91
KRH45249	Soybean	mitochondrion	43.03	44.44
Bra016733.1-P	Field mustard	mitochondrion	78.24	42.84
TraesCS4B01G219300.1	Wheat	mitochondrion	18.34	40.76
TraesCS4D01G219500.2	Wheat	mitochondrion	18.09	40.22
PGSC0003DMT400033769	Potato	mitochondrion	41.81	40.05
Solyc05g009550.2.1	Tomato	mitochondrion	41.81	40.05
VIT_01s0011g03330.t01	Wine grape	mitochondrion	45.23	39.53
TraesCS4A01G084900.2	Wheat	mitochondrion	16.87	38.12
HORVU4Hr1G062250.1	Barley	mitochondrion	16.87	37.5
EER92528	Sorghum	mitochondrion	16.38	36.02
EER93588	Sorghum	mitochondrion	29.34	35.09
Os03t0710000-01	Rice	plasma membrane	30.07	34.65
Zm00001d034058_P004	Maize	mitochondrion	15.89	34.21
Zm00001d033714_P001	Maize	mitochondrion	29.34	34.19
TraesCS4B01G044800.1	Wheat	mitochondrion	27.87	33.93
TraesCS4D01G044800.1	Wheat	mitochondrion	28.36	33.53
TraesCS4B01G045100.1	Wheat	mitochondrion	28.36	32.86
Zm00001d028457_P001	Maize	mitochondrion	15.89	32.5
TraesCS4D01G044400.1	Wheat	mitochondrion	27.87	32.39
TraesCS4A01G269300.1	Wheat	mitochondrion	27.87	32.2
Os03t0257500-01	Rice	mitochondrion	14.91	31.61
GSMUA_Achr6P07700_001	Banana	cytosol, mitochondrion, nucleus	31.78	30.52
Zm00001d034057_P001	Maize	mitochondrion	16.63	29.69
Zm00001d047887_P001	Maize	mitochondrion	17.85	29.32
TraesCS4B01G219400.1	Wheat	mitochondrion	18.83	29.17
Zm00001d047886_P001	Maize	mitochondrion	17.6	28.8
Zm00001d047885_P001	Maize	mitochondrion	17.6	28.8
GSMUA_Achr6P24100_001	Banana	mitochondrion	33.99	28.43
TraesCS4D01G219800.1	Wheat	mitochondrion	19.07	27.76
Zm00001d047884_P001	Maize	cytosol	9.54	27.27
TraesCS4A01G084800.1	Wheat	mitochondrion	18.58	26.95
OQU90964	Sorghum	mitochondrion	11.0	26.95
HORVU4Hr1G062260.2	Barley	plastid	18.34	26.32
GSMUA_Achr10P...	Banana	mitochondrion	30.32	25.62
AT1G25420.1	Thale cress	mitochondrion	18.83	23.84
AT3G15490.1	Thale cress	mitochondrion, nucleus	11.0	21.33
Zm00001d028456_P001	Maize	mitochondrion	26.65	20.53
EER92527	Sorghum	mitochondrion, plastid	26.89	20.52
Os03t0257600-01	Rice	mitochondrion	26.41	20.0
TraesCS4A01G085000.1	Wheat	mitochondrion, plastid	25.43	19.44
TraesCS4D01G219400.3	Wheat	mitochondrion, plastid	25.43	19.26
TraesCS4B01G219200.1	Wheat	mitochondrion, plastid	25.18	19.0
HORVU4Hr1G062110.1	Barley	mitochondrion	25.18	18.8
AT4G35730.1	Thale cress	plastid	21.27	18.67
AT1G52315.1	Thale cress	mitochondrion	14.91	17.58
AT2G14830.1	Thale cress	mitochondrion	15.16	16.15
AT1G79910.1	Thale cress	nucleus	14.43	15.49
AT1G34220.1	Thale cress	nucleus	21.27	13.41
AT2G19710.1	Thale cress	mitochondrion, nucleus	24.21	10.57
AT4G29440.1	Thale cress	mitochondrion	22.49	8.44
AT4G32350.1	Thale cress	nucleus	14.18	7.92
AT1G51900.1	Thale cress	mitochondrion	12.96	6.85

Protein Annotations

Gene3D:1.20.1260.60	MapMan:35.2	EntrezGene:837894	ProteinID:AAG09545.1	ProteinID:AEE29002.1	EMBL:AK119024
ArrayExpress:AT1G13340	EnsemblPlantsGene:AT1G13340	RefSeq:AT1G13340	TAIR:AT1G13340	RefSeq:AT1G13340-TAIR-G	EnsemblPlants:AT1G13340.1
TAIR:AT1G13340.1	Unigene:At.43764	EMBL:BT005580	GO:GO:0006810	GO:GO:0006950	GO:GO:0006979
GO:GO:0008150	GO:GO:0015031	InterPro:Ist1	RefSeq:NP_172792.1	PFAM:PF03398	PO:PO:0000230
PO:PO:0000293	PO:PO:0001054	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0009005	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009046	PO:PO:0009047	PO:PO:0020030
PO:PO:0020100	PO:PO:0025022	PANTHER:PTHR12161	PANTHER:PTHR12161:SF16	UniProt:Q9FX63	UniParc:UPI000000C6BA
SEG:seg	:	:	:	:	:

Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q9FX63]

Coordinates

chr1:-:4569448..4571229

Molecular Weight (calculated)

45403.6 Da

IEP (calculated)

6.309

GRAVY (calculated)

-0.625

Length

409 amino acids

Sequence
(BLAST)

001: MGKKLDALLG RSFKTNKFKS LITLALTRLS ILKNQRQARL SQAISDVTEL LKLGQHEHAY HRVDQVVKDQ NTLDVLFFIH GYFTLCLDRI HLFEHNRDCP
101: EELLEAVSGL LFAASRIGEF PELQEIRNVL ISRFGKDLAA RSIELRSNCG VDPKIIQKLS TRPPPKEVRM KALKEIAAEN NIVLKLDQAS TSTEGTTNMQ
201: GTSDVSKTKL TSKDGRGEGY GLSDSVKRGK KKYKDVADAA QAAFESAAHA AEAAQAAVEL SQFSPRGHDS PGNIGGENSF HGSENKESEQ EQEGNDDSSE
301: GEGDVMSESK RSMSDSEDII DVPVMSFRED PVKLLEKDTI IYDSEEETQP SVETITISKS KDEQNRMVGS NRADTRHVDH MVRSIEDPIM RKAGLKGPVS
401: VRTRQVRGY

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.