Factsheet for TraesCS4B01G045100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G044800.1	Wheat	mitochondrion	93.48	95.38
TraesCS4A01G269300.1	Wheat	mitochondrion	92.35	92.09
TraesCS4B01G044800.1	Wheat	mitochondrion	86.69	91.07
Zm00001d033714_P001	Maize	mitochondrion	59.21	59.54
EER93588	Sorghum	mitochondrion	56.94	58.77
Os03t0710000-01	Rice	plasma membrane	58.64	58.31
VIT_14s0006g03050.t01	Wine grape	mitochondrion	22.38	50.64
TraesCS4B01G219300.1	Wheat	mitochondrion	23.23	44.57
TraesCS4B01G219400.1	Wheat	mitochondrion	26.06	34.85
Solyc02g085830.2.1	Tomato	mitochondrion	20.11	34.13
GSMUA_Achr6P07700_001	Banana	cytosol, mitochondrion, nucleus	41.08	34.04
PGSC0003DMT400032944	Potato	mitochondrion	19.83	33.65
KRH45249	Soybean	mitochondrion	37.11	33.08
Solyc05g009550.2.1	Tomato	mitochondrion	38.53	31.85
KRH75395	Soybean	mitochondrion	36.26	31.76
GSMUA_Achr10P...	Banana	mitochondrion	42.78	31.2
GSMUA_Achr6P24100_001	Banana	mitochondrion	42.78	30.88
PGSC0003DMT400033769	Potato	mitochondrion	37.11	30.68
CDY21093	Canola	mitochondrion	33.71	30.13
CDY50176	Canola	mitochondrion	33.43	29.95
VIT_01s0011g03330.t01	Wine grape	mitochondrion	37.68	28.42
AT1G13340.1	Thale cress	mitochondrion	32.86	28.36
CDY19375	Canola	mitochondrion	32.58	28.19
TraesCS3B01G296700.1	Wheat	mitochondrion, plastid	23.8	26.33
Bra019826.1-P	Field mustard	mitochondrion	33.43	23.89
TraesCS4B01G219200.1	Wheat	mitochondrion, plastid	36.26	23.62
KRH46919	Soybean	mitochondrion	25.5	21.95
KRH01764	Soybean	mitochondrion	25.5	20.36
TraesCS5B01G347800.1	Wheat	mitochondrion	24.93	18.18
TraesCS3B01G498800.1	Wheat	cytosol	25.21	17.42
Bra016733.1-P	Field mustard	mitochondrion	33.71	15.93
TraesCS6B01G161300.1	Wheat	cytosol, nucleus, plastid	16.71	8.27
TraesCS7B01G345200.1	Wheat	cytosol, nucleus, plastid	15.01	7.29
TraesCS3B01G284600.1	Wheat	nucleus	22.66	7.2
TraesCS3B01G288900.2	Wheat	plastid	22.66	6.94

Protein Annotations

EnsemblPlants:TraesCS4B01G045100.1	EnsemblPlantsGene:TraesCS4B01G045100	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF16	PFAM:PF03398	SEG:seg	MapMan:35.2

Description

No Description!

Coordinates

chr4B:-:32423873..32424934

Molecular Weight (calculated)

38685.4 Da

IEP (calculated)

7.974

GRAVY (calculated)

-0.687

Length

353 amino acids

Sequence
(BLAST)

001: MGRTLDVLLG RTSKQTARLK SLLHLATKRI AVVRAHREVR CAQARGDVEQ LLRQGHPDRA LLRAEQVIRE RDTLDVLLLL DAYCALLADR SALLDDAHRD
101: CPEELREAAA GLCYAAARCG DLPELQEARA LLAARFGRGF ASAAAELRAG CGVNAKLVQR LSTALPSLES RQMVLLEIGA DKDIPVRLHS DAADSYHHED
201: PARRSHHGHG HGHRKKRHDD DDDAERRHAT PRAEGPEGDK AASKLTFKDV EEAAQAAFQP AATAAAAAKA AIELSRAGSS STDDRHRRNP GRAHVDDEML
301: HGDEDLADAK KFGRIGHVRN YSSDAEDLPE KKHGEGQDTP RSRPASVRTN RRL

Best Arabidopsis Sequence Match ( AT1G13340.1 )
(BLAST)

001: MGKKLDALLG RSFKTNKFKS LITLALTRLS ILKNQRQARL SQAISDVTEL LKLGQHEHAY HRVDQVVKDQ NTLDVLFFIH GYFTLCLDRI HLFEHNRDCP
101: EELLEAVSGL LFAASRIGEF PELQEIRNVL ISRFGKDLAA RSIELRSNCG VDPKIIQKLS TRPPPKEVRM KALKEIAAEN NIVLKLDQAS TSTEGTTNMQ
201: GTSDVSKTKL TSKDGRGEGY GLSDSVKRGK KKYKDVADAA QAAFESAAHA AEAAQAAVEL SQFSPRGHDS PGNIGGENSF HGSENKESEQ EQEGNDDSSE
301: GEGDVMSESK RSMSDSEDII DVPVMSFRED PVKLLEKDTI IYDSEEETQP SVETITISKS KDEQNRMVGS NRADTRHVDH MVRSIEDPIM RKAGLKGPVS
401: VRTRQVRGY

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q9FX63]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.