Factsheet for TraesCS6B01G161300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

mitochondrion 2
cytosol 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G255800.1
TraesCS2D01G266900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79910.1	TraesCS2A01G255800.1	AT2G39760.1	21798944
AT1G79910.1	TraesCS2D01G266900.1	AT2G39760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G122600.1	Wheat	cytosol, nucleus, plastid	95.37	95.1
TraesCS6A01G133000.1	Wheat	cytosol, nucleus, plastid	95.23	94.97
HORVU6Hr1G025460.3	Barley	nucleus	91.73	88.86
Os02t0159200-01	Rice	nucleus	63.81	67.41
EES04550	Sorghum	nucleus	59.89	62.52
Zm00001d053852_P001	Maize	nucleus	58.34	60.73
GSMUA_Achr5P23530_001	Banana	nucleus	13.46	53.63
KRH06586	Soybean	cytosol	4.21	49.18
TraesCS7B01G345200.1	Wheat	cytosol, nucleus, plastid	44.88	44.02
KRG89505	Soybean	mitochondrion	11.64	43.92
GSMUA_Achr6P29590_001	Banana	cytosol	25.81	40.17
GSMUA_Achr8P15690_001	Banana	mitochondrion	33.8	35.97
CDX87282	Canola	cytosol	10.1	35.64
PGSC0003DMT400042551	Potato	nucleus	15.43	35.6
Solyc06g066690.2.1	Tomato	nucleus	15.01	34.63
GSMUA_Achr9P11280_001	Banana	cytosol, mitochondrion, nucleus, plastid	32.68	34.62
CDX87899	Canola	nucleus	13.18	34.06
VIT_09s0002g04580.t01	Wine grape	nucleus	23.84	33.93
CDY52976	Canola	mitochondrion	14.31	33.01
CDY49898	Canola	mitochondrion	12.34	32.12
CDY49897	Canola	nucleus	11.78	31.34
KRH23458	Soybean	mitochondrion	17.53	31.33
CDY37561	Canola	nucleus	16.27	30.77
CDX87900	Canola	mitochondrion	12.34	30.56
AT1G79910.1	Thale cress	nucleus	16.27	30.45
CDY41108	Canola	nucleus	16.13	30.42
Bra008502.1-P	Field mustard	nucleus	16.13	30.34
Solyc03g120120.2.1	Tomato	nucleus	19.78	29.62
Bra035204.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	7.15	29.48
AT1G52315.1	Thale cress	mitochondrion	14.31	29.39
TraesCS4B01G219300.1	Wheat	mitochondrion	7.57	29.35
PGSC0003DMT400014529	Potato	nucleus	18.51	29.33
Bra018962.1-P	Field mustard	extracellular, vacuole	14.59	29.21
KRH44367	Soybean	mitochondrion	13.04	28.88
Solyc12g043150.1.1	Tomato	nucleus	20.48	28.63
KRH47048	Soybean	mitochondrion	15.15	28.27
CDX68838	Canola	nucleus	22.58	25.56
CDX75238	Canola	nucleus	22.58	25.52
PGSC0003DMT400092826	Potato	nucleus	14.87	24.94
VIT_11s0016g04010.t01	Wine grape	nucleus	25.39	24.93
KRH39280	Soybean	mitochondrion, nucleus	24.12	23.4
KRH48400	Soybean	mitochondrion, nucleus	24.12	23.4
PGSC0003DMT400022180	Potato	nucleus	17.39	22.46
AT4G32350.1	Thale cress	nucleus	22.86	22.27
TraesCS4B01G219400.1	Wheat	mitochondrion	8.13	21.97
Solyc07g022860.2.1	Tomato	nucleus	16.83	21.78
KRH60286	Soybean	nucleus	22.72	21.15
TraesCS3B01G296700.1	Wheat	mitochondrion, plastid	9.12	20.38
KRH41578	Soybean	nucleus	22.58	20.18
TraesCS5B01G347800.1	Wheat	mitochondrion	12.06	17.77
Bra030391.1-P	Field mustard	nucleus	12.06	17.2
TraesCS4B01G045100.1	Wheat	mitochondrion	8.27	16.71
TraesCS4B01G044800.1	Wheat	mitochondrion	7.71	16.37
TraesCS3B01G498800.1	Wheat	cytosol	10.66	14.87
TraesCS4B01G219200.1	Wheat	mitochondrion, plastid	9.82	12.92
TraesCS3B01G284600.1	Wheat	nucleus	13.74	8.82
TraesCS3B01G288900.2	Wheat	plastid	13.32	8.25

Protein Annotations

EnsemblPlants:TraesCS6B01G161300.1	EnsemblPlantsGene:TraesCS6B01G161300	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF40	PFAM:PF03398	SEG:seg	MapMan:35.2

Description

No Description!

Coordinates

chr6B:+:165329495..165333419

Molecular Weight (calculated)

80566.4 Da

IEP (calculated)

9.632

GRAVY (calculated)

-1.152

Length

713 amino acids

Sequence
(BLAST)

001: MFDSLLNSKF HNKCKHAIKC TRTRLDLVRK KKQAMVKFLR KDVADLLTNN LESHAFGRME GLIVEMNQAS CYDMIEQYCD YIGKQLNNLQ KQSECPHEAL
101: EAVSTLIFAA ARYPDLPELC ELRHVFTEKY GASIEPFVSS EFVQKLQNKS FTKEEKLQVI EDVAEEFVIP FNTKTFEQQI SGVPPTKKEL LKKGSFNGVE
201: VEVSGRNGHR VDKHAVLDRK SKSIPDKREW KQEFQIKPKD IHVVPDYIGQ VGEKSRKNYS DKPVEKKHLD SDVPSVDMKR RNGHEKEINK DEKKGGQSWR
301: ELMNAEELDL NGSKKQEVAM AKSVQREMKK IVPPYTDLKV TEEKDGTEKA NGKGYHRTHM AGGTDHNWGH ADLGLKTLGL EKQETESAGT LNGNGKTVNK
401: VPPYSKPYRA TSEKSAEEDN NGLYNRARHL EEFGQPVQDR QQMPEKLVNM RPPYVKPNSS MKPAHENPTD QAANGYKLNG SEATGHRRDG LVDDDGAPRP
501: VSVRRKSSRP PTHGSLHDEA TNDEKVTNQT PGGRTRRPSS RNGSQDDHER RKHSSRRNGS TSGSDYQTEE DETDTAIDFG NLLPRAPRKH RSRSAHPREG
601: GGHDDEERMM DKLLRHYSKK GMEREEHKTR SKSRTPRPRA DQPADGNNRD GAPSHPERTA SLPTESGSPV GRTKAPAPVR STSLQQDTSR GNVHPKMPDF
701: DELAARISAM KRA

Best Arabidopsis Sequence Match ( AT1G79910.1 )
(BLAST)

001: MFDGLFKPKF YTKCKSLVKI TKTRVDTVKR KKNSVCKYLK NDIVDLLKNS LDYNAYGRAE GLIEEKRRLA CYEFLEQFCN CVASNVSLLQ KSIRCPDECR
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8L402]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.