CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06586	Soybean	cytosol	7.52	98.36
KRH60286	Soybean	nucleus	84.71	88.25
KRH48400	Soybean	mitochondrion, nucleus	52.76	57.28
KRH39280	Soybean	mitochondrion, nucleus	52.01	56.46
GSMUA_Achr5P23530_001	Banana	nucleus	9.52	42.46
KRG89505	Soybean	mitochondrion	9.9	41.8
VIT_11s0016g04010.t01	Wine grape	nucleus	36.34	39.94
CDX68838	Canola	nucleus	27.82	35.24
CDX75238	Canola	nucleus	27.44	34.71
KRH23458	Soybean	mitochondrion	17.29	34.59
KRH44367	Soybean	mitochondrion	13.03	32.3
KRH47048	Soybean	mitochondrion	15.04	31.41
AT4G32350.1	Thale cress	nucleus	27.94	30.46
Solyc07g022860.2.1	Tomato	nucleus	20.68	29.95
PGSC0003DMT400022180	Potato	nucleus	20.68	29.89
GSMUA_Achr6P29590_001	Banana	cytosol	15.54	27.07
EES04550	Sorghum	nucleus	21.18	24.74
Zm00001d053852_P001	Maize	nucleus	21.18	24.67
Os02t0159200-01	Rice	nucleus	19.92	23.56
TraesCS6A01G133000.1	Wheat	cytosol, nucleus, plastid	20.8	23.22
TraesCS7A01G445700.1	Wheat	cytosol, mitochondrion, nucleus	20.55	23.13
KRH26063	Soybean	cytosol	6.02	22.97
TraesCS6D01G122600.1	Wheat	cytosol, nucleus, plastid	20.43	22.8
TraesCS7D01G433700.1	Wheat	cytosol, mitochondrion, nucleus	20.68	22.73
TraesCS6B01G161300.1	Wheat	cytosol, nucleus, plastid	20.18	22.58
Os06t0687000-00	Rice	mitochondrion	20.43	22.36
TraesCS7B01G345200.1	Wheat	cytosol, nucleus, plastid	20.3	22.28
HORVU6Hr1G025460.3	Barley	nucleus	20.55	22.28
HORVU7Hr1G101130.3	Barley	cytosol, nucleus	19.92	21.9
KXG20673	Sorghum	cytosol, nucleus, plastid	20.55	20.89
Zm00001d014521_P001	Maize	mitochondrion	19.8	20.49
KRH55350	Soybean	extracellular	5.14	20.1
GSMUA_Achr8P15690_001	Banana	mitochondrion	16.79	20.0
KRG90825	Soybean	mitochondrion	7.89	19.44
KRH07948	Soybean	mitochondrion	10.65	19.27
KRH70127	Soybean	mitochondrion, nucleus	9.15	19.21
KRH69704	Soybean	mitochondrion	10.53	19.18
GSMUA_Achr9P11280_001	Banana	cytosol, mitochondrion, nucleus, plastid	16.17	19.17
KRH35947	Soybean	mitochondrion	7.64	18.83
KRH46919	Soybean	mitochondrion	8.65	16.83
KRH45249	Soybean	mitochondrion	8.27	16.67
KRH22410	Soybean	mitochondrion, nucleus	13.66	16.37
KRH75395	Soybean	mitochondrion	8.15	16.13
KRH26928	Soybean	nucleus	13.03	15.69
KRH01764	Soybean	mitochondrion	8.65	15.61
KRH35011	Soybean	mitochondrion	7.39	15.17
KRH08570	Soybean	nucleus	9.9	14.96
KRH70215	Soybean	nucleus	9.9	14.71
KRH60150	Soybean	cytosol, mitochondrion, nucleus, plastid	9.65	13.25
Zm00001d036913_P001	Maize	cytosol	7.77	10.15
KRH74171	Soybean	mitochondrion	12.91	9.68
KRH41442	Soybean	cytosol	5.39	9.64
KRH49036	Soybean	mitochondrion	12.66	9.59
Zm00001d051744_P001	Maize	nucleus	5.51	8.76

Protein Annotations

EMBL:ACUP02004772	EnsemblPlants:KRH41578	EnsemblPlantsGene:GLYMA_08G038700	EntrezGene:100812444	Gene3D:1.20.1260.60	GO:GO:0006810
GO:GO:0008150	GO:GO:0015031	InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF29	PFAM:PF03398
ProteinID:KRH41578	ProteinID:KRH41578.1	SEG:seg	UniParc:UPI0002338884	UniProt:K7L4T8	MapMan:35.2

Description

hypothetical protein

Coordinates

chr8:+:3037106..3041831

Molecular Weight (calculated)

89809.0 Da

IEP (calculated)

9.815

GRAVY (calculated)

-0.885

Length

798 amino acids

Sequence
(BLAST)

001: MLDGILGRGF TAKCKSLIKL TNRRIDVIRR KRRATEKFLK KDIADLLLNG LDINAYGRAE GLVVELTLSS CYGFVENCCE FVLKHLPAMQ KLSGCPEECR
101: MAVSSLMFGA ARFSDLPELR DLRQIFQERY GNSMECYVNQ EFAANLNFKS STLENKVCLM QEISSEFSIN WDSKDFKLRM SRSSANVQGH NACMSNHDKP
201: SHGKDFTQKE VRNDVLLEKN CDLANNGCRF RNGKEAIVLN RLDHDLHSRS VLPGNGFKPL NGHEVLRKRD GHDNPGMQEI TVEKSDRGYW KEGSMLKPIG
301: HPSQQKTVEQ FEGGSKLQYS RGNITPPRAN QGCVLKPIGH PSQQKTVEQF EGGSKLHYSR GNITPPRANL GSILKPFGHP SQQKTVEQFE GGSKLQNSRG
401: NATPPRENQV SKLKPFGHPS QQKTEEQFEG GSKVHYSRGN ITPPRANLGS ILKPFGHPSQ QKTVELFKGG SKLQDSIGNT TPLRENQDAA FARKSPSDVG
501: SHFNSNANEP FAVNHAGLPG ADKSERETQS DETPALKPCY SNVIPPPYVK HPNSKQQSST RGANIISSLT DSGGISTYHS AHEKPDAAYV MERRIQIDLD
601: SSDQDWQGNR HERLSKQSCD KEISIREDAE EVPVVKPRSM RRRHSRSRPP GYYDASNEDS ELERKSRSRS RRRDESRRGL KAMLDDERYQ NAEEERVIDK
701: LLIHYSKKPS VLVPEKLKRN SKIHHAHDST RELLQNGSGY ASRSFSLPRE KQKEAEIKKK VFTRAATFEP VRSLEARHVH PKLPDCDDLA ARIAALRG

Best Arabidopsis Sequence Match ( AT4G32350.3 )
(BLAST)

001: MFDGFLGRGF APKGKPLIKL TKNRIDVLRR KRNATIKFLK RDLADLIING HDYNAFSRAG GLLDELRYLW SLDFVEQTCD FVYKQLSTMQ KTPECPEDCR
101: EAISSLMFAA SGFSELPELR ELRQMFHEKY TDSLALFVNQ ELVENMSSKP FSMEKKVKLM EDVALEFSIR WDSKDFEKRI VRQNSISVME TPKSTNDKYK
201: PVDRNMALPK REEFEGSENG VSLNRKTAEA SERRDPLFQS DKESYQNGLR GNQRGLTYKE RSENVLHASR SESKDNKAER KEFYLHSKQN PAREKHQPIF
301: NEGDTIVMKV NYGNLGQGNG HRPGVVDAHK KTEFVASERK EFYSQSKQEP SRERHQPIFN DGDTIVMKVK HENHVQGNGH KNGVVDLHKK IEVNASEKLK
401: SSSSKRADKL VIGFKQESFF QGYKHEKNEE HAHQKVEDST SRPPKPNSKS KRAESINPGS RHHNDRESKE NAVLVGKSTE EDPSGDNVKG GEYEYDHANP
501: ARKVEERETE RMKSPFYKSL PPPYVKKSIA KARHEKAEAL DNPKARFDGE EGNHPDNGKN VYGAERRNGA GHHEVNDIDN ASLKRQTNRR KHIVESGGDD
601: HISSRRRENS RKGLQVLIDE DEKDSEEKMM DKLLMHYSKK PSSYEKDNVQ EESKSRRTHL KKGESDEEMM IHQPARSRSL PAEQLAGPSE PAKTFARAAS
701: FQPERSSEAK HVHPKLPNYD DLAARFAELK GR

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8RXT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.