CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06586	Soybean	cytosol	7.57	95.08
KRH41578	Soybean	nucleus	88.25	84.71
KRH48400	Soybean	mitochondrion, nucleus	55.22	57.55
KRH39280	Soybean	mitochondrion, nucleus	54.31	56.6
GSMUA_Achr5P23530_001	Banana	nucleus	10.31	44.13
KRG89505	Soybean	mitochondrion	10.57	42.86
VIT_11s0016g04010.t01	Wine grape	nucleus	38.38	40.5
CDX68838	Canola	nucleus	29.37	35.71
CDX75238	Canola	nucleus	28.98	35.18
KRH23458	Soybean	mitochondrion	18.02	34.59
KRH44367	Soybean	mitochondrion	14.23	33.85
KRH47048	Soybean	mitochondrion	16.45	32.98
AT4G32350.1	Thale cress	nucleus	29.5	30.87
PGSC0003DMT400022180	Potato	nucleus	22.06	30.62
Solyc07g022860.2.1	Tomato	nucleus	21.28	29.58
GSMUA_Achr6P29590_001	Banana	cytosol	16.19	27.07
EES04550	Sorghum	nucleus	21.93	24.6
Zm00001d053852_P001	Maize	nucleus	21.54	24.09
Os02t0159200-01	Rice	nucleus	21.02	23.85
TraesCS7A01G445700.1	Wheat	cytosol, mitochondrion, nucleus	21.41	23.13
TraesCS6A01G133000.1	Wheat	cytosol, nucleus, plastid	21.54	23.08
TraesCS6D01G122600.1	Wheat	cytosol, nucleus, plastid	21.41	22.94
TraesCS7D01G433700.1	Wheat	cytosol, mitochondrion, nucleus	21.67	22.86
TraesCS6B01G161300.1	Wheat	cytosol, nucleus, plastid	21.15	22.72
Os06t0687000-00	Rice	mitochondrion	21.41	22.5
KRH26063	Soybean	cytosol	6.14	22.49
TraesCS7B01G345200.1	Wheat	cytosol, nucleus, plastid	21.15	22.28
HORVU6Hr1G025460.3	Barley	nucleus	21.41	22.28
HORVU7Hr1G101130.3	Barley	cytosol, nucleus	20.63	21.76
KXG20673	Sorghum	cytosol, nucleus, plastid	21.54	21.02
Zm00001d014521_P001	Maize	mitochondrion	20.89	20.75
GSMUA_Achr8P15690_001	Banana	mitochondrion	17.49	20.0
KRH07948	Soybean	mitochondrion	11.49	19.95
KRG90825	Soybean	mitochondrion	8.36	19.75
KRH55350	Soybean	extracellular	5.22	19.61
KRH70127	Soybean	mitochondrion, nucleus	9.66	19.47
KRH69704	Soybean	mitochondrion	11.1	19.41
KRH35947	Soybean	mitochondrion	7.96	18.83
GSMUA_Achr9P11280_001	Banana	cytosol, mitochondrion, nucleus, plastid	16.32	18.57
KRH46919	Soybean	mitochondrion	9.27	17.32
KRH22410	Soybean	mitochondrion, nucleus	14.75	16.97
KRH01764	Soybean	mitochondrion	9.66	16.74
KRH35011	Soybean	mitochondrion	8.49	16.71
KRH26928	Soybean	nucleus	14.23	16.44
KRH45249	Soybean	mitochondrion	8.36	16.16
KRH75395	Soybean	mitochondrion	8.36	15.88
KRH08570	Soybean	nucleus	10.44	15.15
KRH70215	Soybean	nucleus	10.57	15.08
KRH60150	Soybean	cytosol, mitochondrion, nucleus, plastid	9.53	12.56
Zm00001d036913_P001	Maize	cytosol	8.36	10.47
KRH41442	Soybean	cytosol	5.48	9.42
KRH74171	Soybean	mitochondrion	13.05	9.4
KRH49036	Soybean	mitochondrion	12.79	9.31
Zm00001d051744_P001	Maize	nucleus	6.01	9.16

Protein Annotations

EMBL:ACUP02003357	EnsemblPlants:KRH60286	EnsemblPlantsGene:GLYMA_05G231200	EntrezGene:102662624	Gene3D:1.20.1260.60	GO:GO:0006810
GO:GO:0008150	GO:GO:0015031	InterPro:Ist1	ncoils:Coil	PANTHER:PTHR12161	PANTHER:PTHR12161:SF29
PFAM:PF03398	ProteinID:KRH60286	ProteinID:KRH60286.1	SEG:seg	UniParc:UPI000295D4B2	UniProt:I1K5U8
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:40895038..40899985

Molecular Weight (calculated)

86416.9 Da

IEP (calculated)

9.918

GRAVY (calculated)

-0.915

Length

766 amino acids

Sequence
(BLAST)

001: MLDGILGRGF TAKCKSLIKL TKSRIDVIRR KRRATEKFLK KDIADLLLNG LDINAYGRAE GLVVELTLSS CYGFVEQCCE FVLKHLPAMQ KLSGCPEECR
101: MAVSSLMFGA ARFSDLPELR DLRQIFQERY GNCMECYVNQ EFAANLNFKF STLENKVSLM QEIASEFSIN WDSKAFKLRM SRSSATAQGH NACVPNHDKP
201: SHGKDFTQKE VRNDVLLEKN CDLANNECRF QNGKEAVVLN RLDHDLHSKS TLPGNGFKPL NGHEVLRKRD GHDNSGRQEI TVEKSDKGCW KEGSMLKPIG
301: HPSQQKTVEQ FEGGSKLQYS RGNITPPRAN QGSMLKLFGH PSQQKNVEQF EGGSEQQRSR GNATPPRENQ VSMLKSFGHP SQQKIVEQFE GGPKLHYSRA
401: DITPSRANQG SMLKSIGHPS QQKTVEQFKG GSKLQDSMGN TTPLRENQGT TTSRKSSSHA GSRFKSNVNE SFAVNHVGLP GTDKSERENQ RDETPTLKPC
501: YSNVIPPPYL KHPNSKQQSS TRGANMISSL TDSGGISTYH SAHEKPDAAS VLERRIQIDL DSSDQDWQGN RHERRSKQSR EKEISEEVPV VKPRSMRRRQ
601: SRSRLPGYYD ATNEDSGLNR KSRSRSRRRD ESRRGLKAML DDERYQNAEE ERIIDKLLIH YSKKPSVLVP EKLKRNSKVH HAHDSTTELL QNGSGYGSDE
701: TPEMVSHHAS RSFSLPREQH REAEIKKKVF TRAATFEPVR SLEARHVHPK LPDCDDLAAR IAALRA

Best Arabidopsis Sequence Match ( AT4G32350.3 )
(BLAST)

001: MFDGFLGRGF APKGKPLIKL TKNRIDVLRR KRNATIKFLK RDLADLIING HDYNAFSRAG GLLDELRYLW SLDFVEQTCD FVYKQLSTMQ KTPECPEDCR
101: EAISSLMFAA SGFSELPELR ELRQMFHEKY TDSLALFVNQ ELVENMSSKP FSMEKKVKLM EDVALEFSIR WDSKDFEKRI VRQNSISVME TPKSTNDKYK
201: PVDRNMALPK REEFEGSENG VSLNRKTAEA SERRDPLFQS DKESYQNGLR GNQRGLTYKE RSENVLHASR SESKDNKAER KEFYLHSKQN PAREKHQPIF
301: NEGDTIVMKV NYGNLGQGNG HRPGVVDAHK KTEFVASERK EFYSQSKQEP SRERHQPIFN DGDTIVMKVK HENHVQGNGH KNGVVDLHKK IEVNASEKLK
401: SSSSKRADKL VIGFKQESFF QGYKHEKNEE HAHQKVEDST SRPPKPNSKS KRAESINPGS RHHNDRESKE NAVLVGKSTE EDPSGDNVKG GEYEYDHANP
501: ARKVEERETE RMKSPFYKSL PPPYVKKSIA KARHEKAEAL DNPKARFDGE EGNHPDNGKN VYGAERRNGA GHHEVNDIDN ASLKRQTNRR KHIVESGGDD
601: HISSRRRENS RKGLQVLIDE DEKDSEEKMM DKLLMHYSKK PSSYEKDNVQ EESKSRRTHL KKGESDEEMM IHQPARSRSL PAEQLAGPSE PAKTFARAAS
701: FQPERSSEAK HVHPKLPNYD DLAARFAELK GR

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8RXT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.