Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G79910.1 | CDX93236 | AT2G39760.1 | 21798944 |
| AT1G79910.1 | CDX93238 | AT2G39760.1 | 21798944 |
| AT1G79910.1 | CDY07031 | AT2G39760.1 | 21798944 |
| AT1G79910.1 | CDY07638 | AT2G39760.1 | 21798944 |
| AT1G79910.1 | CDY61778 | AT2G39760.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035204.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 67.33 | 78.61 |
| KRG89505 | Soybean | mitochondrion | 43.56 | 46.56 |
| CDY41108 | Canola | nucleus | 83.66 | 44.71 |
| CDY37561 | Canola | nucleus | 83.17 | 44.56 |
| AT1G79910.1 | Thale cress | nucleus | 81.19 | 43.04 |
| GSMUA_Achr5P23530_001 | Banana | nucleus | 33.66 | 37.99 |
| CDY49898 | Canola | mitochondrion | 39.11 | 28.83 |
| CDY49897 | Canola | nucleus | 37.13 | 27.99 |
| KRH44367 | Soybean | mitochondrion | 44.06 | 27.64 |
| CDX87900 | Canola | mitochondrion | 38.61 | 27.08 |
| CDY52976 | Canola | mitochondrion | 40.59 | 26.54 |
| CDX87899 | Canola | nucleus | 36.14 | 26.45 |
| PGSC0003DMT400042551 | Potato | nucleus | 38.61 | 25.24 |
| Solyc06g066690.2.1 | Tomato | nucleus | 38.12 | 24.92 |
| KRH23458 | Soybean | mitochondrion | 46.04 | 23.31 |
| CDY04642 | Canola | cytosol | 16.83 | 22.67 |
| KRH47048 | Soybean | mitochondrion | 42.57 | 22.51 |
| Solyc03g120120.2.1 | Tomato | nucleus | 48.02 | 20.38 |
| CDY58595 | Canola | mitochondrion | 30.69 | 19.2 |
| CDY53122 | Canola | mitochondrion | 30.2 | 18.89 |
| CDX93076 | Canola | mitochondrion | 22.28 | 18.59 |
| CDY20110 | Canola | nucleus | 21.78 | 18.41 |
| CDX78503 | Canola | mitochondrion | 31.68 | 18.18 |
| CDY21843 | Canola | nucleus | 21.78 | 17.96 |
| PGSC0003DMT400014529 | Potato | nucleus | 38.61 | 17.33 |
| VIT_09s0002g04580.t01 | Wine grape | nucleus | 42.57 | 17.17 |
| CDX97673 | Canola | plastid | 21.78 | 17.05 |
| CDX98558 | Canola | plastid | 21.29 | 16.67 |
| CDX70491 | Canola | mitochondrion | 31.19 | 16.62 |
| GSMUA_Achr6P29590_001 | Banana | cytosol | 37.62 | 16.59 |
| Solyc12g043150.1.1 | Tomato | nucleus | 41.58 | 16.47 |
| CDY22873 | Canola | mitochondrion | 28.71 | 16.2 |
| CDY33850 | Canola | mitochondrion | 27.72 | 15.43 |
| CDY69937 | Canola | plastid | 28.22 | 13.73 |
| CDY15051 | Canola | cytosol | 11.88 | 13.56 |
| CDY41639 | Canola | plastid | 28.71 | 13.49 |
| CDY21093 | Canola | mitochondrion | 26.24 | 13.42 |
| CDY50176 | Canola | mitochondrion | 25.74 | 13.2 |
| CDX75521 | Canola | plastid | 28.22 | 13.16 |
| CDY19375 | Canola | mitochondrion | 26.24 | 12.99 |
| CDX69159 | Canola | plastid | 28.22 | 12.95 |
| CDX75238 | Canola | nucleus | 40.1 | 12.84 |
| CDX68838 | Canola | nucleus | 38.61 | 12.38 |
| CDY46461 | Canola | cytosol, mitochondrion, nucleus | 31.19 | 11.13 |
| Os02t0159200-01 | Rice | nucleus | 37.13 | 11.11 |
| GSMUA_Achr8P15690_001 | Banana | mitochondrion | 36.63 | 11.04 |
| CDX91784 | Canola | nucleus | 31.68 | 11.03 |
| EES04550 | Sorghum | nucleus | 36.63 | 10.83 |
| Zm00001d053852_P001 | Maize | nucleus | 36.63 | 10.8 |
| CDY48635 | Canola | cytosol | 17.82 | 10.75 |
| TraesCS7A01G445700.1 | Wheat | cytosol, mitochondrion, nucleus | 37.62 | 10.72 |
| PGSC0003DMT400092826 | Potato | nucleus | 22.28 | 10.59 |
| TraesCS7D01G433700.1 | Wheat | cytosol, mitochondrion, nucleus | 37.62 | 10.47 |
| TraesCS7B01G345200.1 | Wheat | cytosol, nucleus, plastid | 37.62 | 10.45 |
| GSMUA_Achr9P11280_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 34.65 | 10.4 |
| HORVU7Hr1G101130.3 | Barley | cytosol, nucleus | 37.13 | 10.33 |
| Os06t0687000-00 | Rice | mitochondrion | 37.13 | 10.29 |
| TraesCS6B01G161300.1 | Wheat | cytosol, nucleus, plastid | 35.64 | 10.1 |
| TraesCS6D01G122600.1 | Wheat | cytosol, nucleus, plastid | 35.15 | 9.93 |
| TraesCS6A01G133000.1 | Wheat | cytosol, nucleus, plastid | 34.65 | 9.79 |
| KXG20673 | Sorghum | cytosol, nucleus, plastid | 37.62 | 9.68 |
| HORVU6Hr1G025460.3 | Barley | nucleus | 35.15 | 9.65 |
| Zm00001d014521_P001 | Maize | mitochondrion | 33.66 | 8.82 |
| CDY35879 | Canola | mitochondrion | 25.25 | 5.56 |
| CDX82713 | Canola | mitochondrion | 25.25 | 5.55 |
| CDY43502 | Canola | mitochondrion | 24.26 | 5.24 |
| Zm00001d036913_P001 | Maize | cytosol | 13.37 | 4.42 |
| Zm00001d051744_P001 | Maize | nucleus | 5.94 | 2.39 |
Protein Annotations
| EnsemblPlants:CDX87282 | EnsemblPlantsGene:GSBRNA2T00146242001 | Gene3D:1.20.1260.60 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| InterPro:Ist1 | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF14 | PFAM:PF03398 | ProteinID:CDX87282 | ProteinID:CDX87282.1 |
| SEG:seg | UniParc:UPI0004EE1AC6 | MapMan:35.2 | : | : | : |
Description
BnaA07g35910D
Coordinates
chrLK031850:+:13191..14515
Molecular Weight (calculated)
23516.9 Da
IEP (calculated)
9.341
GRAVY (calculated)
-0.245
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MLDGLFKPKF YTKCKYLVKI TKTRVETVKR KKNSVCKYLK KDIVDLLNNS LDYNAYGRVI LLLFFSQGLI EEKRRLSCYE LLEQFCVCVA SNVSLLQNSS
101: KCPDECREAI SSLVYAAARV SEVPELCNLR SLFAERYGKS LLLQSSMMQL VERFKAEPPS KEMKVELLQE IAREYSIKWD AKSLEQRLYG HEDRILMRSR
201: LA
101: KCPDECREAI SSLVYAAARV SEVPELCNLR SLFAERYGKS LLLQSSMMQL VERFKAEPPS KEMKVELLQE IAREYSIKWD AKSLEQRLYG HEDRILMRSR
201: LA
001: MFDGLFKPKF YTKCKSLVKI TKTRVDTVKR KKNSVCKYLK NDIVDLLKNS LDYNAYGRAE GLIEEKRRLA CYEFLEQFCN CVASNVSLLQ KSIRCPDECR
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y
Arabidopsis Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8L402]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.