CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021112.1-P	Field mustard	nucleus	93.06	95.4
CDY20110	Canola	nucleus	93.06	95.4
CDX98558	Canola	plastid	62.86	59.69
CDX97673	Canola	plastid	62.45	59.3
AT3G15490.1	Thale cress	mitochondrion, nucleus	44.08	51.18
CDX93076	Canola	mitochondrion	47.76	48.35
CDY15051	Canola	cytosol	27.35	37.85
KRH26063	Soybean	cytosol	25.31	29.67
KRH55350	Soybean	extracellular	23.67	28.43
CDY04642	Canola	cytosol	15.1	24.67
CDX87282	Canola	cytosol	17.96	21.78
CDY49897	Canola	nucleus	18.78	17.16
CDX87899	Canola	nucleus	19.18	17.03
CDY49898	Canola	mitochondrion	18.37	16.42
CDY33850	Canola	mitochondrion	24.08	16.25
CDY22873	Canola	mitochondrion	23.67	16.2
CDX78503	Canola	mitochondrion	22.86	15.91
CDX87900	Canola	mitochondrion	17.55	14.93
CDY52976	Canola	mitochondrion	18.78	14.89
CDX70491	Canola	mitochondrion	22.86	14.78
CDY58595	Canola	mitochondrion	19.18	14.55
CDY53122	Canola	mitochondrion	19.18	14.55
CDY37561	Canola	nucleus	20.0	13.0
CDY41108	Canola	nucleus	20.0	12.96
CDY50176	Canola	mitochondrion	20.41	12.69
CDY69937	Canola	plastid	21.22	12.53
CDX75521	Canola	plastid	21.63	12.24
CDY21093	Canola	mitochondrion	19.59	12.15
CDX69159	Canola	plastid	21.63	12.05
CDY19375	Canola	mitochondrion	20.0	12.01
CDY41639	Canola	plastid	20.82	11.86
CDY48635	Canola	cytosol	14.29	10.45
CDY46461	Canola	cytosol, mitochondrion, nucleus	22.04	9.54
CDX91784	Canola	nucleus	22.04	9.31
CDX75238	Canola	nucleus	17.55	6.81
CDX68838	Canola	nucleus	16.33	6.35
CDY43502	Canola	mitochondrion	23.27	6.1
CDY35879	Canola	mitochondrion	22.04	5.89
CDX82713	Canola	mitochondrion	22.04	5.88

Protein Annotations

EnsemblPlants:CDY21843	EnsemblPlantsGene:GSBRNA2T00018137001	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF20	PFAM:PF03398	ProteinID:CDY21843	ProteinID:CDY21843.1
UniParc:UPI0004EE62A0	UniProt:A0A078GAV2	MapMan:35.2	:	:	:

Description

BnaC01g36050DBnaC01g36050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAV2]

Coordinates

chrLK032125:+:143401..144537

Molecular Weight (calculated)

28272.8 Da

IEP (calculated)

10.010

GRAVY (calculated)

-0.673

Length

245 amino acids

Sequence
(BLAST)

001: MKETACAKNK EPKPGCFRNV FAVWFRSSRW RQASKCKLHI QSLQCSVKIH RRRRDCMVKQ SRSDVAKLLD SDRLQEARRK TRQSYEDEKM LSAYDQVDYF
101: CTSILQNFSP LDRQSDVHLL PEETKEAMAG LIFAASRIGE LKELQIIRSL FVQRFGLGFD KDCVDLRPGH FVSSEIVKIL ETKYSRDAFS PENLLGIFQN
201: YQTSSTTANV DPITKDSASR DDHGIARSDT AKKRNQKRVL GERKL

Best Arabidopsis Sequence Match ( AT3G15490.1 )
(BLAST)

001: MVRQSRSDIA QLLSYGRYSE ALPKAKQFYE DERRLSAYDQ VELFCTTILQ NISSLKYENN VDLLPEETKK AMAGIIFAAS RIGELEDLQH IRSFFVQRFG
101: LKFDKECVDL RQGNVVGFEI VKILNTNMRG DEITHIVREL SHKYKTNITT STDSISEDLA SSDDLGIADS DAMKVEKMKR ALRRKKVMKE NSKFLHPNLR
201: ESQGRDRSFR R

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q4PSP2]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.