CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69937	Canola	plastid	92.09	95.42
CDX75521	Canola	plastid	84.65	84.06
CDX69159	Canola	plastid	84.42	82.5
AT4G35730.1	Thale cress	plastid	83.02	76.61
VIT_00s1235g00010.t01	Wine grape	mitochondrion	50.0	61.78
KRH07948	Soybean	mitochondrion	58.6	57.14
KRH69704	Soybean	mitochondrion	58.14	57.08
VIT_00s0302g00010.t01	Wine grape	endoplasmic reticulum	43.02	51.25
PGSC0003DMT400003908	Potato	plastid	54.88	48.26
CDY04642	Canola	cytosol	16.51	47.33
Solyc02g083130.2.1	Tomato	plastid	54.42	43.09
EER99304	Sorghum	plastid	44.19	39.58
Os09t0547200-01	Rice	mitochondrion	43.72	39.5
GSMUA_Achr3P26880_001	Banana	mitochondrion	39.53	39.35
TraesCS5D01G353300.1	Wheat	mitochondrion	43.26	38.59
TraesCS5B01G347800.1	Wheat	mitochondrion	43.26	38.43
TraesCS5A01G346800.1	Wheat	plastid	43.02	38.14
CDY53122	Canola	mitochondrion	28.37	37.77
CDY58595	Canola	mitochondrion	28.37	37.77
Zm00001d021453_P002	Maize	plastid	43.95	36.14
HORVU5Hr1G086370.1	Barley	nucleus, plastid	43.95	34.62
CDX87282	Canola	cytosol	13.49	28.71
CDY48635	Canola	cytosol	20.93	26.87
CDY46461	Canola	cytosol, mitochondrion, nucleus	34.88	26.5
CDX91784	Canola	nucleus	35.35	26.21
CDY49898	Canola	mitochondrion	15.81	24.82
CDX87899	Canola	nucleus	15.81	24.64
CDY52976	Canola	mitochondrion	17.67	24.6
CDX78503	Canola	mitochondrion	19.07	23.3
CDX87900	Canola	mitochondrion	15.35	22.92
CDY49897	Canola	nucleus	14.19	22.76
CDY22873	Canola	mitochondrion	18.37	22.07
CDY33850	Canola	mitochondrion	18.37	21.76
CDY41108	Canola	nucleus	19.07	21.69
CDX70491	Canola	mitochondrion	19.07	21.64
CDY21093	Canola	mitochondrion	19.77	21.52
CDY37561	Canola	nucleus	18.84	21.49
CDY19375	Canola	mitochondrion	20.23	21.32
CDY21843	Canola	nucleus	11.86	20.82
CDY50176	Canola	mitochondrion	19.07	20.81
CDY20110	Canola	nucleus	11.4	20.5
CDX98558	Canola	plastid	11.63	19.38
CDX97673	Canola	plastid	11.63	19.38
CDY15051	Canola	cytosol	7.21	17.51
CDX93076	Canola	mitochondrion	9.53	16.94
CDY35879	Canola	mitochondrion	32.56	15.27
CDX82713	Canola	mitochondrion	32.56	15.23
CDY43502	Canola	mitochondrion	32.09	14.76
CDX75238	Canola	nucleus	20.23	13.79
CDX68838	Canola	nucleus	20.0	13.65

Protein Annotations

EnsemblPlants:CDY41639	EnsemblPlantsGene:GSBRNA2T00073298001	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF19	PFAM:PF03398	ProteinID:CDY41639	ProteinID:CDY41639.1
SEG:seg	UniParc:UPI0004EF3CAA	UniProt:A0A078HW67	MapMan:35.2	:	:

Description

BnaC03g62450DBnaC03g62450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HW67]

Coordinates

chrLK032502:-:84937..86922

Molecular Weight (calculated)

48008.1 Da

IEP (calculated)

7.871

GRAVY (calculated)

-0.556

Length

430 amino acids

Sequence
(BLAST)

001: MTAAGVASEK TKKLFKLSLS LFRLGFNSSK CKTAAKMAVA RIKLLRNKRQ VVVKQMRRDI ALLLQSGQDA TARIRVEHVI REQNILAANE IIELFCELIV
101: SRLAIITKHK ECPVDLKEGI ASLIFAAPRC SEIPELGDLK DIFEKKYGRD FVSAATELRP TCGVNRMLVV KLSVTRPEGE FKLKVMKEIA KEFQVDWDTK
201: ETEQELLKPK EETIDGPRAF ISASSLPVER ASQDLIDPTK AVPRSSSSLS INTHYHDTEA AAEAAAELAK QAVEAAQVAA LLAYRRDSTT EDHYHPGSTR
301: QSLDSETSSY YAKPYVRRHS CNNPCVNNEA DHMEEAKEAV RRKHSHNSPP HPPPATSEIK FDESDYEEET EPEEGLLQSR ASSLPPNRAP PQAPQSRRDS
401: SGHQVHPKLP DYDTLAARFE AIRHSKGPLI

Best Arabidopsis Sequence Match ( AT4G35730.1 )
(BLAST)

001: MTAAEVASAQ TKKLMKFSLS LFRRGFNSSK CKTAAKMAVA RIKLIRNKRL VVVKQMRRDI AVLLQSGQDA TARIRVEHVI REQNIQAANE IIELFCELIV
101: SRLTIITKQK QCPVDLKEGI ASLIFAAPRC SEIPELGDLR DIFAKKYGKD FVSAATDLRP SCGVNRMLID KLSVRNPGGE YKLKIMKEIA KEFQVDWDTT
201: ETEQELLKPQ EESIDGPRKF VSASSLPVNR AAINEPIDPT KAVPRSTSSM SINTHYHDTE SAAEAATELA KQAVAAAQVA SLLATRRDSS NKEFSVSSDH
301: STHQKDSQYM DHHHHHPGSR RQSRDSETSS YYAKPGAENR GMGRRHSYNN PGINESDYEE EYTNTEAEAK ETMRRRHSYN PRSVPPPATS EIKFDESDYY
401: EEETEPDEPS QGRVSSLPPN RAPPQAPQSG ESRQDSSGHQ VHPKLPDYDI LAARFEAIRH SKGPLI

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4JNS8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.