Factsheet for PGSC0003DMT400003908

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g083130.2.1	Tomato	plastid	90.8	81.77
VIT_00s1235g00010.t01	Wine grape	mitochondrion	48.88	68.68
VIT_00s0302g00010.t01	Wine grape	endoplasmic reticulum	43.56	59.0
CDY69937	Canola	plastid	48.67	57.35
KRH69704	Soybean	mitochondrion	51.33	57.31
KRH07948	Soybean	mitochondrion	51.33	56.92
Bra010522.1-P	Field mustard	plastid	48.47	56.29
CDX75521	Canola	plastid	48.88	55.2
Bra011633.1-P	Field mustard	mitochondrion, plastid	48.88	54.94
CDY41639	Canola	plastid	48.26	54.88
CDX69159	Canola	plastid	48.67	54.09
AT4G35730.1	Thale cress	plastid	50.1	52.58
Os09t0547200-01	Rice	mitochondrion	42.74	43.91
EER99304	Sorghum	plastid	42.54	43.33
GSMUA_Achr3P26880_001	Banana	mitochondrion	38.24	43.29
TraesCS5D01G353300.1	Wheat	mitochondrion	40.7	41.29
TraesCS5B01G347800.1	Wheat	mitochondrion	40.7	41.12
TraesCS5A01G346800.1	Wheat	plastid	40.29	40.62
Zm00001d021453_P002	Maize	plastid	41.92	39.2
HORVU5Hr1G086370.1	Barley	nucleus, plastid	41.1	36.81
PGSC0003DMT400032944	Potato	mitochondrion	13.09	30.77
PGSC0003DMT400070850	Potato	cytosol	32.31	29.92
PGSC0003DMT400042551	Potato	nucleus	15.34	24.27
PGSC0003DMT400033769	Potato	mitochondrion	20.86	23.89
PGSC0003DMT400032356	Potato	cytosol, mitochondrion	12.27	22.81
PGSC0003DMT400014529	Potato	nucleus	16.97	18.44
PGSC0003DMT400020212	Potato	cytosol	13.09	16.2
PGSC0003DMT400092826	Potato	nucleus	13.09	15.06
PGSC0003DMT400030456	Potato	mitochondrion, nucleus, plastid	30.88	13.92
PGSC0003DMT400047266	Potato	nucleus	13.91	12.5
PGSC0003DMT400022180	Potato	nucleus	11.45	10.14

Protein Annotations

EnsemblPlants:PGSC0003DMT400003908	EnsemblPlantsGene:PGSC0003DMG400001544	EntrezGene:102584459	Gene3D:1.20.1260.60	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	ncoils:Coil	PANTHER:PTHR12161	PANTHER:PTHR12161:SF19	PFAM:PF03398	PGSC:PGSC0003DMG400001544
RefSeq:XP_006340805.1	SEG:seg	UniParc:UPI000295A254	UniProt:M0ZMI4	MapMan:35.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400001544]

Coordinates

chr2:+:38835809..38839202

Molecular Weight (calculated)

54461.5 Da

IEP (calculated)

8.374

GRAVY (calculated)

-0.691

Length

489 amino acids

Sequence
(BLAST)

001: MTVANAATKH CKKAMKMGLS LFCRTFNSSK CKTMAKMTVA RIKLLRNKRE VVVRQMRRDI AMLLESRQDA TARIRVEHVI REQNILQANE ILELFCELIV
101: ARLTIIAKQK QCPADLKEGI SSLIFAAPRC SDIPELMGIK DVFEKKYGKD FVSAATDLRP NAGVNRTLIE KLSVKTPSGE VKLKIMKEIA KEYQVEWDTV
201: DSEMELLKPP EERIEGPNGF VSATSLPLKP TSKQPAEPNN LPRASDDGEL KVAKFDDPAS AAKAAAESAK QAIAAAEAAA YLASKDAKAS SAGCHNSRNN
301: ATVDNIPFIS GAQAPKFSQN EVAPPSQSIV DLYDMHWSSK NIRNSENSHS SAGEEMPLDM KRSQKFDRRH SYNVPSSNRN VQYDDSDCDE EIEMEDPPSG
401: TYKPSPPTDT DGGKFYRRHS YNVPSAHSGI KFDESDGEEE METQEFTRGT NRAPNRPAPH VPRVHPNLPD YDKLTARFES LKSQKSRRT

Best Arabidopsis Sequence Match ( AT4G35730.1 )
(BLAST)

001: MTAAEVASAQ TKKLMKFSLS LFRRGFNSSK CKTAAKMAVA RIKLIRNKRL VVVKQMRRDI AVLLQSGQDA TARIRVEHVI REQNIQAANE IIELFCELIV
101: SRLTIITKQK QCPVDLKEGI ASLIFAAPRC SEIPELGDLR DIFAKKYGKD FVSAATDLRP SCGVNRMLID KLSVRNPGGE YKLKIMKEIA KEFQVDWDTT
201: ETEQELLKPQ EESIDGPRKF VSASSLPVNR AAINEPIDPT KAVPRSTSSM SINTHYHDTE SAAEAATELA KQAVAAAQVA SLLATRRDSS NKEFSVSSDH
301: STHQKDSQYM DHHHHHPGSR RQSRDSETSS YYAKPGAENR GMGRRHSYNN PGINESDYEE EYTNTEAEAK ETMRRRHSYN PRSVPPPATS EIKFDESDYY
401: EEETEPDEPS QGRVSSLPPN RAPPQAPQSG ESRQDSSGHQ VHPKLPDYDI LAARFEAIRH SKGPLI

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4JNS8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.