Factsheet for GSMUA_Achr3P26880_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1235g00010.t01	Wine grape	mitochondrion	40.28	50.0
VIT_00s0302g00010.t01	Wine grape	endoplasmic reticulum	36.57	43.77
KRH07948	Soybean	mitochondrion	42.13	41.27
CDY69937	Canola	plastid	39.35	40.96
CDX75521	Canola	plastid	40.51	40.42
KRH69704	Soybean	mitochondrion	40.97	40.41
Bra011633.1-P	Field mustard	mitochondrion, plastid	40.51	40.23
Bra010522.1-P	Field mustard	plastid	38.89	39.91
EER99304	Sorghum	plastid	44.21	39.79
CDY41639	Canola	plastid	39.35	39.53
CDX69159	Canola	plastid	40.05	39.32
Os09t0547200-01	Rice	mitochondrion	42.36	38.45
PGSC0003DMT400003908	Potato	plastid	43.29	38.24
TraesCS5B01G347800.1	Wheat	mitochondrion	42.82	38.22
TraesCS5D01G353300.1	Wheat	mitochondrion	42.59	38.17
TraesCS5A01G346800.1	Wheat	plastid	42.59	37.94
AT4G35730.1	Thale cress	plastid	39.81	36.91
Zm00001d021453_P002	Maize	plastid	44.21	36.52
GSMUA_Achr3P29510_001	Banana	mitochondrion	27.08	35.89
GSMUA_Achr5P23530_001	Banana	nucleus	14.12	34.08
Solyc02g083130.2.1	Tomato	plastid	42.82	34.07
GSMUA_Achr9P21370_001	Banana	mitochondrion	25.69	33.95
HORVU5Hr1G086370.1	Barley	nucleus, plastid	42.36	33.52
GSMUA_Achr5P23420_001	Banana	mitochondrion	30.32	26.73
GSMUA_Achr6P02830_001	Banana	cytosol	32.87	24.15
GSMUA_Achr6P07700_001	Banana	cytosol, mitochondrion, nucleus	20.6	20.89
GSMUA_Achr6P24100_001	Banana	mitochondrion	21.99	19.43
GSMUA_Achr10P...	Banana	mitochondrion	21.76	19.42
GSMUA_Achr6P29590_001	Banana	cytosol	17.13	16.16
GSMUA_Achr1P14380_001	Banana	nucleus	37.5	13.01
GSMUA_Achr9P11280_001	Banana	cytosol, mitochondrion, nucleus, plastid	18.29	11.74
GSMUA_Achr8P15690_001	Banana	mitochondrion	17.82	11.49

Protein Annotations

EnsemblPlants:GSMUA_Achr3P26880_001	EnsemblPlants:GSMUA_Achr3T26880_001	EnsemblPlantsGene:GSMUA_Achr3G26880_001	Gene3D:1.20.1260.60	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	ncoils:Coil	PANTHER:PTHR12161	PANTHER:PTHR12161:SF19	PFAM:PF03398	SEG:seg
UniParc:UPI000296866D	UniProt:M0SI54	MapMan:35.2	:	:	:

Description

DUF292 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G26880_001]

Coordinates

chr3:-:26551158..26555374

Molecular Weight (calculated)

48669.3 Da

IEP (calculated)

5.646

GRAVY (calculated)

-0.703

Length

432 amino acids

Sequence
(BLAST)

001: MATARIKLLR NKREAQVRQM RRDVAMLLES GRDETARIRV EHVIREQNVM AANEIIELFC ELLVARLPII AKQRICPPDL KEGISSLIYA SPRCSEIPEL
101: SRIVHMFEKK YGKDFVSAAT DLRPESGVNC MLIEKLSVRK PTGEIKLKVL KEIAKEYRVT WDAAESEQEL LKPPEEALEG PCTFTSGASF PAKPTLPLHD
201: IQPNEHYIRP NNNREGSILQ FNDPMSAAEA AAESAEKAIQ AAQAAAHLAN QNSHSFDQPT QMDTLICNLN KFNQPERLQR QSLSSCQPYG TNDLSENEVK
301: PPGKFFNSQS FNCSNNMDDD SMDTVNLDEK RILRRNSCTT HTAHSDIKFD DSDGLESDTD EELEMDSPPL ESHRPPSRPP PVLPSQQVHS EESYADSHQE
401: SSKKNSGTHV HPKLPDYEAL TARFEALKSR RI

Best Arabidopsis Sequence Match ( AT4G35730.1 )
(BLAST)

001: MTAAEVASAQ TKKLMKFSLS LFRRGFNSSK CKTAAKMAVA RIKLIRNKRL VVVKQMRRDI AVLLQSGQDA TARIRVEHVI REQNIQAANE IIELFCELIV
101: SRLTIITKQK QCPVDLKEGI ASLIFAAPRC SEIPELGDLR DIFAKKYGKD FVSAATDLRP SCGVNRMLID KLSVRNPGGE YKLKIMKEIA KEFQVDWDTT
201: ETEQELLKPQ EESIDGPRKF VSASSLPVNR AAINEPIDPT KAVPRSTSSM SINTHYHDTE SAAEAATELA KQAVAAAQVA SLLATRRDSS NKEFSVSSDH
301: STHQKDSQYM DHHHHHPGSR RQSRDSETSS YYAKPGAENR GMGRRHSYNN PGINESDYEE EYTNTEAEAK ETMRRRHSYN PRSVPPPATS EIKFDESDYY
401: EEETEPDEPS QGRVSSLPPN RAPPQAPQSG ESRQDSSGHQ VHPKLPDYDI LAARFEAIRH SKGPLI

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4JNS8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.