Factsheet for GSMUA_Achr6P02830_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P23420_001	Banana	mitochondrion	60.71	72.86
KXG24567	Sorghum	cytosol, plastid	49.49	56.4
TraesCS3B01G498800.1	Wheat	cytosol	48.47	55.77
HORVU3Hr1G098720.3	Barley	cytosol	48.13	55.17
TraesCS3D01G451700.1	Wheat	cytosol	47.79	54.88
TraesCS3A01G459100.1	Wheat	cytosol, plastid	47.96	54.86
KRH70215	Soybean	nucleus	49.49	54.19
KRH08570	Soybean	nucleus	48.64	54.17
VIT_18s0164g00040.t01	Wine grape	nucleus	49.32	53.8
Zm00001d049479_P003	Maize	cytosol, mitochondrion, plastid	48.81	52.56
PGSC0003DMT400070850	Potato	cytosol	46.43	51.7
Os08t0175200-01	Rice	nucleus	49.32	51.69
Solyc04g072560.2.1	Tomato	nucleus, unclear	46.09	51.33
Zm00001d024425_P003	Maize	cytosol	48.81	50.62
KRH35011	Soybean	mitochondrion	30.44	46.02
GSMUA_Achr3P29510_001	Banana	mitochondrion	25.0	45.09
GSMUA_Achr9P21370_001	Banana	mitochondrion	25.0	44.95
Bra036745.1-P	Field mustard	nucleus	42.86	44.52
CDY46461	Canola	cytosol, mitochondrion, nucleus	42.86	44.52
CDX91784	Canola	nucleus	43.37	43.97
CDY48635	Canola	cytosol	23.98	42.09
AT1G34220.1	Thale cress	nucleus	44.9	40.68
GSMUA_Achr5P23530_001	Banana	nucleus	10.2	33.52
GSMUA_Achr3P26880_001	Banana	mitochondrion	24.15	32.87
GSMUA_Achr6P07700_001	Banana	cytosol, mitochondrion, nucleus	17.86	24.65
GSMUA_Achr10P...	Banana	mitochondrion	19.22	23.35
GSMUA_Achr6P24100_001	Banana	mitochondrion	18.2	21.88
GSMUA_Achr6P29590_001	Banana	cytosol	12.76	16.38
GSMUA_Achr1P14380_001	Banana	nucleus	27.38	12.93
GSMUA_Achr8P15690_001	Banana	mitochondrion	14.29	12.54
GSMUA_Achr9P11280_001	Banana	cytosol, mitochondrion, nucleus, plastid	12.76	11.14

Protein Annotations

EnsemblPlants:GSMUA_Achr6P02830_001	EnsemblPlants:GSMUA_Achr6T02830_001	EnsemblPlantsGene:GSMUA_Achr6G02830_001	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	InterPro:Ist1	ncoils:Coil	PANTHER:PTHR12161	PANTHER:PTHR12161:SF5	PFAM:PF03398
SEG:seg	UniParc:UPI0002950CE6	UniProt:M0T3N1	MapMan:35.2	:	:

Description

DUF292 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G02830_001]

Coordinates

chr6:-:1927792..1933471

Molecular Weight (calculated)

64357.9 Da

IEP (calculated)

4.702

GRAVY (calculated)

-0.353

Length

588 amino acids

Sequence
(BLAST)

001: MSMIDAFFSK GFKGAKCKTL LKLTIPRIKL LRNRREIQLK QMRKDIAKLL ENGQEATARI RVEHIIREEN MMAAQEILEL FCELITVRLP IIETQRECPL
101: DLKEAISSIC FAAPRCADLP ELQQVQMLFA AKYGKEFVMA ATELLPDCGV NRQIIELLSI RAPSVEVKLK LLKEIAEEHE LDWDPSTTES EYLKPHEDLL
201: NGPNNFTNGS ALPLPPQKHD ALSSDVEESL TEPDSEADFD SLDLPEVPKD SVRAALDVPS ASGNVSNLPS SMHDLGLDHQ ASKSIPDEDM PHVPPMAPAG
301: NDLEPSIASP YNHPNVEHKQ FVPFASSPSS FSVSAQQNET LPPPLSSMSE SLKPSQPAHP PPLSSSISLE PITSAVSSAS LPSTKNELAA SLSREKSEIN
401: VDLQDILAAA QAAADSAERA AIAARAAANL AQVRITDLAT KRSNRTSESC GEELQGEGSE QANNSARPTF HQQYSFGSNK NLAAYGQEWK PDSPTLPSHE
501: VPLSSHVPQR LPSLEDDPYF SYPNLFTSKD TEVKSGIHDS SDNSHPGNLL VGYVSSMFQF SRLLISECAY ICKANINTAI YFDSVLLV

Best Arabidopsis Sequence Match ( AT1G34220.2 )
(BLAST)

001: MSMLDSFFNK GFKAAKCKTL LKLTIPRIKL IRNRREAQIK QMRREIAKLL ETGQEATARI RVEHIIREEK MMAAQEILEL FCELIAVRLP IIEAQRECPL
101: DLKEAISSVC FAAPRCSDLT ELQQVQILFV SKYGKEFVAA ASELKPDSGV NRKLVELLSV RAPSPETKLK LLKEIAEEHE LDWDPASTET DLFKSHEDLL
201: DGPKQFGGGS KLPLPEEQNE KTNLTSLSAA KEKSDSDSEY DILDFPEVPN VLLRPTPGAT SVNAPDAAKS ASYEHTSHDL PFDSENAGVE KTASKRDEHP
301: AKASKTVVEG QQSSPILMES FEKKNYSPPS IDAVGPIPTK ESGASRDTPR KISDGDLQDV LMAAQAAADS AERAASAARS AASLAQLRIN ELTRKTSDQY
401: PESPSENPFH APSMGNLQFD HQNSSASSSG DLTELQRAET SSLFNSEQNN QQPQTHSSME KPQFDRQNSS FSSYGDLTPQ RFHSMEKPQF DHQNSSGSNY
501: DDLTPQRFSS LEKPQFDHQN SSGSNYDDLT PHRFPSMEKP QFDHQNSSVS SYGDLPELQR PETSPLDRLS PDQDHQQMRL PSMEDDPYYS YPNLFTSQKH
601: DPSSGSHSFS DNTRPAHDS

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4HUX0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.