Factsheet for Bra036745.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46461	Canola	cytosol, mitochondrion, nucleus	99.12	99.12
CDX91784	Canola	nucleus	96.47	94.14
AT1G34220.1	Thale cress	nucleus	78.27	68.26
KRH70215	Soybean	nucleus	50.88	53.63
VIT_18s0164g00040.t01	Wine grape	nucleus	51.06	53.62
KRH08570	Soybean	nucleus	49.65	53.22
Solyc04g072560.2.1	Tomato	nucleus, unclear	49.29	52.84
PGSC0003DMT400070850	Potato	cytosol	49.29	52.84
KRH35011	Soybean	mitochondrion	33.04	48.07
GSMUA_Achr5P23420_001	Banana	mitochondrion	40.64	46.94
KXG24567	Sorghum	cytosol, plastid	41.87	45.93
TraesCS3B01G498800.1	Wheat	cytosol	40.64	45.01
TraesCS3D01G451700.1	Wheat	cytosol	40.46	44.73
TraesCS3A01G459100.1	Wheat	cytosol, plastid	40.28	44.36
HORVU3Hr1G098720.3	Barley	cytosol	40.11	44.25
Bra012478.1-P	Field mustard	mitochondrion	25.09	43.96
GSMUA_Achr6P02830_001	Banana	cytosol	44.52	42.86
Zm00001d049479_P003	Maize	cytosol, mitochondrion, plastid	41.34	42.86
Os08t0175200-01	Rice	nucleus	41.34	41.71
Zm00001d024425_P003	Maize	cytosol	41.7	41.62
Bra011633.1-P	Field mustard	mitochondrion, plastid	27.21	35.4
Bra010522.1-P	Field mustard	plastid	26.15	35.15
Bra035204.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	8.3	27.17
Bra021112.1-P	Field mustard	nucleus	9.72	23.01
Bra008502.1-P	Field mustard	nucleus	13.6	20.32
Bra006177.1-P	Field mustard	mitochondrion	12.37	19.89
Bra027239.1-P	Field mustard	plastid	8.83	19.76
Bra018962.1-P	Field mustard	extracellular, vacuole	12.37	19.66
Bra013184.1-P	Field mustard	mitochondrion	8.13	19.01
Bra019826.1-P	Field mustard	mitochondrion	16.43	18.83
Bra039012.1-P	Field mustard	mitochondrion	28.09	17.34
Bra011109.1-P	Field mustard	mitochondrion	27.74	17.07
Bra030391.1-P	Field mustard	nucleus	11.66	13.2
Bra016733.1-P	Field mustard	mitochondrion	15.9	12.05
Bra011340.1-P	Field mustard	nucleus	0.88	5.32

Protein Annotations

EnsemblPlants:Bra036745.1	EnsemblPlants:Bra036745.1-P	EnsemblPlantsGene:Bra036745	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	InterPro:Ist1	ncoils:Coil	PANTHER:PTHR12161	PANTHER:PTHR12161:SF5	PFAM:PF03398
SEG:seg	UniParc:UPI0002545FCC	UniProt:M4F6N5	MapMan:35.2	:	:

Description

AT1G34220 (E=1e-179) | unknown protein

Coordinates

chrA08:+:7386801..7388973

Molecular Weight (calculated)

63304.5 Da

IEP (calculated)

4.861

GRAVY (calculated)

-0.784

Length

566 amino acids

Sequence
(BLAST)

001: MSMLDSFFNK GFKAAKCKTL LKLTIPRIKL IRNRREAQIK QMRREIAKLL ETGQEATARI RVEHIIREEK MMAAQEIIEL FCELIAVRLP IIEAQRECPL
101: DLKEAISSVC FAAPRCSDLT ELQQVQLLFV SKYGKEFVAA ASELKPDSGV NRKLVELLSV RAPSPETKLK LLKEIAQEHQ LDWDPASTET DLFKSHEDLL
201: DGPKQFGGGS KVPLKEEQDK GSHLTMLSLS RPEEQRQSDS DSEYEELDFP EVPNVLLRPT PAATYKHTSL DLPFDSESPG QDNLPSKRDE HTAKASSTVL
301: EGQTESDPVK QNCYSPPPVG TVGSFSTNES DAPKKISDLD LQDVLTAAQA AADSAERAAA AARSAASLAQ LRINELTKKT PEQSSPESPT ENPFYSSPPQ
401: QTMEKAQFDH QNSSASSYGD HTEFQKEESS SLFSHQTERL PSMEKPQFDH QNSSASSYGD LTDFQLGDYS SPFNQQQAGR LPSFEKTRFD HQNSSVSSYG
501: DITELQRPEN SSFDRLTPDQ DHQQMRLPSR EDDPYYSYPN LFTSQNLDRS PGSRSFSDTS KPAHDS

Best Arabidopsis Sequence Match ( AT1G34220.2 )
(BLAST)

001: MSMLDSFFNK GFKAAKCKTL LKLTIPRIKL IRNRREAQIK QMRREIAKLL ETGQEATARI RVEHIIREEK MMAAQEILEL FCELIAVRLP IIEAQRECPL
101: DLKEAISSVC FAAPRCSDLT ELQQVQILFV SKYGKEFVAA ASELKPDSGV NRKLVELLSV RAPSPETKLK LLKEIAEEHE LDWDPASTET DLFKSHEDLL
201: DGPKQFGGGS KLPLPEEQNE KTNLTSLSAA KEKSDSDSEY DILDFPEVPN VLLRPTPGAT SVNAPDAAKS ASYEHTSHDL PFDSENAGVE KTASKRDEHP
301: AKASKTVVEG QQSSPILMES FEKKNYSPPS IDAVGPIPTK ESGASRDTPR KISDGDLQDV LMAAQAAADS AERAASAARS AASLAQLRIN ELTRKTSDQY
401: PESPSENPFH APSMGNLQFD HQNSSASSSG DLTELQRAET SSLFNSEQNN QQPQTHSSME KPQFDRQNSS FSSYGDLTPQ RFHSMEKPQF DHQNSSGSNY
501: DDLTPQRFSS LEKPQFDHQN SSGSNYDDLT PHRFPSMEKP QFDHQNSSVS SYGDLPELQR PETSPLDRLS PDQDHQQMRL PSMEDDPYYS YPNLFTSQKH
601: DPSSGSHSFS DNTRPAHDS

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4HUX0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.