Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46461 | Canola | cytosol, mitochondrion, nucleus | 68.41 | 78.45 |
| Bra036745.1-P | Field mustard | nucleus | 68.26 | 78.27 |
| CDX91784 | Canola | nucleus | 68.41 | 76.55 |
| KRH70215 | Soybean | nucleus | 45.61 | 55.12 |
| Solyc04g072560.2.1 | Tomato | nucleus, unclear | 44.84 | 55.11 |
| KRH08570 | Soybean | nucleus | 44.68 | 54.92 |
| PGSC0003DMT400070850 | Potato | cytosol | 44.53 | 54.73 |
| VIT_18s0164g00040.t01 | Wine grape | nucleus | 45.3 | 54.55 |
| CDY48635 | Canola | cytosol | 26.5 | 51.34 |
| GSMUA_Achr5P23420_001 | Banana | mitochondrion | 36.83 | 48.78 |
| KXG24567 | Sorghum | cytosol, plastid | 38.21 | 48.06 |
| KRH35011 | Soybean | mitochondrion | 28.66 | 47.81 |
| TraesCS3B01G498800.1 | Wheat | cytosol | 36.98 | 46.97 |
| TraesCS3D01G451700.1 | Wheat | cytosol | 36.83 | 46.68 |
| TraesCS3A01G459100.1 | Wheat | cytosol, plastid | 36.83 | 46.5 |
| HORVU3Hr1G098720.3 | Barley | cytosol | 36.52 | 46.2 |
| Zm00001d049479_P003 | Maize | cytosol, mitochondrion, plastid | 38.37 | 45.6 |
| GSMUA_Achr6P02830_001 | Banana | cytosol | 40.68 | 44.9 |
| Os08t0175200-01 | Rice | nucleus | 37.9 | 43.85 |
| Zm00001d024425_P003 | Maize | cytosol | 37.9 | 43.39 |
| AT1G25420.1 | Thale cress | mitochondrion | 21.57 | 43.34 |
| AT4G35730.1 | Thale cress | plastid | 22.5 | 31.33 |
| AT1G13340.1 | Thale cress | mitochondrion | 13.41 | 21.27 |
| AT1G52315.1 | Thale cress | mitochondrion | 10.79 | 20.17 |
| AT1G79910.1 | Thale cress | nucleus | 11.71 | 19.95 |
| AT3G15490.1 | Thale cress | mitochondrion, nucleus | 6.32 | 19.43 |
| AT2G14830.1 | Thale cress | mitochondrion | 11.25 | 19.01 |
| AT2G19710.1 | Thale cress | mitochondrion, nucleus | 23.88 | 16.54 |
| AT4G29440.1 | Thale cress | mitochondrion | 22.8 | 13.58 |
| AT4G32350.1 | Thale cress | nucleus | 13.25 | 11.75 |
| AT1G51900.1 | Thale cress | mitochondrion | 9.4 | 7.88 |
Protein Annotations
| Gene3D:1.20.1260.60 | MapMan:35.2 | EntrezGene:840321 | ProteinID:AEE31687.1 | ArrayExpress:AT1G34220 | EnsemblPlantsGene:AT1G34220 |
| RefSeq:AT1G34220 | TAIR:AT1G34220 | RefSeq:AT1G34220-TAIR-G | EnsemblPlants:AT1G34220.1 | TAIR:AT1G34220.1 | ncoils:Coil |
| UniProt:F4HUX0 | GO:GO:0003674 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | InterPro:Ist1 |
| RefSeq:NP_174684.2 | PFAM:PF03398 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR12161 |
| PANTHER:PTHR12161:SF5 | UniParc:UPI000034F445 | SEG:seg | : | : | : |
Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4HUX0]
Coordinates
chr1:-:12462849..12466000
Molecular Weight (calculated)
72577.2 Da
IEP (calculated)
4.903
GRAVY (calculated)
-0.740
Length
649 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMLDSFFNK GFKAAKCKTL LKLTIPRIKL IRNRREAQIK QMRREIAKLL ETGQEATARI RVEHIIREEK MMAAQEILEL FCELIAVRLP IIEAQRECPL
101: DLKEAISSVC FAAPRCSDLT ELQQVQILFV SKYGKEFVAA ASELKPDSGV NRKTESLIFI AWFSLVETRD LFMFLYFSNS ILQLVELLSV RAPSPETKLK
201: LLKEIAEEHE LDWDPASTET DLFKSHEDLL DGPKQFGGGS KLPLPEEQNE KTNLTSLSAA KEKSDSDSEY DILDFPEVPN VLLRPTPGAT SVNAPDAAKS
301: ASYEHTSHDL PFDSENAGVE KTASKRDEHP AKASKTVVEG QQSSPILMES FEKKNYSPPS IDAVGPIPTK ESGASRDTPR KISDGDLQDV LMAAQAAADS
401: AERAASAARS AASLAQLRIN ELTRKTSDQY PESPSENPFH APSMGNLQFD HQNSSASSSG DLTELQRAET SSLFNSEQNN QQPQTHSSME KPQFDRQNSS
501: FSSYGDLTPQ RFHSMEKPQF DHQNSSGSNY DDLTPQRFSS LEKPQFDHQN SSGSNYDDLT PHRFPSMEKP QFDHQNSSVS SYGDLPELQR PETSPLDRLS
601: PDQDHQQMRL PSMEDDPYYS YPNLFTSQKH DPSSGSHSFS DNTRPAHDS
101: DLKEAISSVC FAAPRCSDLT ELQQVQILFV SKYGKEFVAA ASELKPDSGV NRKTESLIFI AWFSLVETRD LFMFLYFSNS ILQLVELLSV RAPSPETKLK
201: LLKEIAEEHE LDWDPASTET DLFKSHEDLL DGPKQFGGGS KLPLPEEQNE KTNLTSLSAA KEKSDSDSEY DILDFPEVPN VLLRPTPGAT SVNAPDAAKS
301: ASYEHTSHDL PFDSENAGVE KTASKRDEHP AKASKTVVEG QQSSPILMES FEKKNYSPPS IDAVGPIPTK ESGASRDTPR KISDGDLQDV LMAAQAAADS
401: AERAASAARS AASLAQLRIN ELTRKTSDQY PESPSENPFH APSMGNLQFD HQNSSASSSG DLTELQRAET SSLFNSEQNN QQPQTHSSME KPQFDRQNSS
501: FSSYGDLTPQ RFHSMEKPQF DHQNSSGSNY DDLTPQRFSS LEKPQFDHQN SSGSNYDDLT PHRFPSMEKP QFDHQNSSVS SYGDLPELQR PETSPLDRLS
601: PDQDHQQMRL PSMEDDPYYS YPNLFTSQKH DPSSGSHSFS DNTRPAHDS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.