Factsheet for Os08t0175200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24567	Sorghum	cytosol, plastid	74.51	81.01
TraesCS3B01G498800.1	Wheat	cytosol	71.84	78.86
HORVU3Hr1G098720.3	Barley	cytosol	72.01	78.75
TraesCS3D01G451700.1	Wheat	cytosol	70.94	77.73
TraesCS3A01G459100.1	Wheat	cytosol, plastid	71.12	77.63
Zm00001d049479_P003	Maize	cytosol, mitochondrion, plastid	71.66	73.63
Zm00001d024425_P003	Maize	cytosol	73.26	72.49
GSMUA_Achr5P23420_001	Banana	mitochondrion	47.42	54.29
VIT_18s0164g00040.t01	Wine grape	nucleus	49.91	51.95
GSMUA_Achr6P02830_001	Banana	cytosol	51.69	49.32
KRH08570	Soybean	nucleus	46.17	49.05
PGSC0003DMT400070850	Potato	cytosol	45.45	48.3
Solyc04g072560.2.1	Tomato	nucleus, unclear	45.45	48.3
KRH70215	Soybean	nucleus	46.17	48.23
Os01t0687700-01	Rice	mitochondrion, plasma membrane	25.49	44.83
KRH35011	Soybean	mitochondrion	30.48	43.96
CDY48635	Canola	cytosol	24.78	41.49
Bra036745.1-P	Field mustard	nucleus	41.71	41.34
CDY46461	Canola	cytosol, mitochondrion, nucleus	41.71	41.34
CDX91784	Canola	nucleus	41.71	40.34
AT1G34220.1	Thale cress	nucleus	43.85	37.9
Os09t0547200-01	Rice	mitochondrion	26.74	31.51
Os03t0257500-01	Rice	mitochondrion	9.8	28.5
Os03t0710000-01	Rice	plasma membrane	16.22	25.63
Os03t0257600-01	Rice	mitochondrion	15.69	16.3
Os01t0706400-01	Rice	plasma membrane	30.12	15.35
Os02t0159200-01	Rice	nucleus	13.55	11.26
Os06t0687000-00	Rice	mitochondrion	12.66	9.74

Protein Annotations

Gene3D:1.20.1260.60	MapMan:35.2	EntrezGene:4344788	ProteinID:BAD05225.1	ProteinID:BAD05552.1	ProteinID:BAF23025.1
ProteinID:BAT04057.1	ProteinID:BAT04058.1	ncoils:Coil	ProteinID:EEE68132.1	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	InterPro:Ist1	EnsemblPlantsGene:Os08g0175200	EnsemblPlants:Os08t0175200-01	PFAM:PF03398	PANTHER:PTHR12161
PANTHER:PTHR12161:SF5	UniProt:Q6Z4T7	UniParc:UPI000022F18D	RefSeq:XP_015650619.1	SEG:seg	:

Description

Protein of unknown function DUF292, eukaryotic domain containing protein. (Os08t0175200-01);Hypothetical conserved gene. (Os08t0175200-02)

Coordinates

chr8:-:4385770..4388881

Molecular Weight (calculated)

61922.7 Da

IEP (calculated)

4.782

GRAVY (calculated)

-0.549

Length

561 amino acids

Sequence
(BLAST)

001: MLDAFFKGAG GGGGGFRGAK CKTLLKLSIP RIKLLRNRRE LQLRQMRRDI AKLLEAGQEA TARIRVEHII REENMMAAQE ILELFCELIA VRLPIIETQK
101: ECPIDLKEAI SSICFAAPRC ADLPELMQVQ MMFATKYGKE FVAAATELMP DCGVNRQIIE LLSIRAPPVD VKMKLLKEIA EEHEIDWDPS ATETEYLKPH
201: EDLLNGPTYF NGSTLPLPKE KHEETLAASA AEHPDEDYES DTGLESLDLP EVPKAAIRPP SDTPATPDID THVQSSQPTS HEFSNMPSSQ PTSHEFLNMP
301: SSQPSSHEFS NIKSSQTTSH EFSNVQTSQL ASHEFSNPSD LEENPTANAA FMTQPKGSEH IPTPFAQPSM PVSPNEKKHF VPFASPPPFA VPSLVEKNES
401: IPSPSPSPPV KPTDPGMFRT IDEVTPPPTA TDYLFSKQPE QLHSTSAENI ANIDLDDVLS AAQTAAETAE RAASAARAAA NLAQLRIADL KKNSKAYENY
501: SDSVRKESHP QSEVTQKPVF DHQDSFSSDT QGYVPSHLPQ RSPLMEDDPY FSYPNLFSSK P

Best Arabidopsis Sequence Match ( AT1G34220.2 )
(BLAST)

001: MSMLDSFFNK GFKAAKCKTL LKLTIPRIKL IRNRREAQIK QMRREIAKLL ETGQEATARI RVEHIIREEK MMAAQEILEL FCELIAVRLP IIEAQRECPL
101: DLKEAISSVC FAAPRCSDLT ELQQVQILFV SKYGKEFVAA ASELKPDSGV NRKLVELLSV RAPSPETKLK LLKEIAEEHE LDWDPASTET DLFKSHEDLL
201: DGPKQFGGGS KLPLPEEQNE KTNLTSLSAA KEKSDSDSEY DILDFPEVPN VLLRPTPGAT SVNAPDAAKS ASYEHTSHDL PFDSENAGVE KTASKRDEHP
301: AKASKTVVEG QQSSPILMES FEKKNYSPPS IDAVGPIPTK ESGASRDTPR KISDGDLQDV LMAAQAAADS AERAASAARS AASLAQLRIN ELTRKTSDQY
401: PESPSENPFH APSMGNLQFD HQNSSASSSG DLTELQRAET SSLFNSEQNN QQPQTHSSME KPQFDRQNSS FSSYGDLTPQ RFHSMEKPQF DHQNSSGSNY
501: DDLTPQRFSS LEKPQFDHQN SSGSNYDDLT PHRFPSMEKP QFDHQNSSVS SYGDLPELQR PETSPLDRLS PDQDHQQMRL PSMEDDPYYS YPNLFTSQKH
601: DPSSGSHSFS DNTRPAHDS

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4HUX0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.