Factsheet for Bra027239.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 3
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97673	Canola	plastid	96.84	94.96
CDX98558	Canola	plastid	94.47	92.64
Bra021112.1-P	Field mustard	nucleus	60.87	64.44
AT3G15490.1	Thale cress	mitochondrion, nucleus	51.78	62.09
Bra013184.1-P	Field mustard	mitochondrion	47.83	50.0
KRH26063	Soybean	cytosol	23.32	28.23
KRH55350	Soybean	extracellular	20.95	25.98
Bra035204.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	14.62	21.39
Bra006177.1-P	Field mustard	mitochondrion	24.11	17.33
Bra012478.1-P	Field mustard	mitochondrion	17.0	13.31
Bra008502.1-P	Field mustard	nucleus	19.76	13.19
Bra011633.1-P	Field mustard	mitochondrion, plastid	20.95	12.18
Bra010522.1-P	Field mustard	plastid	20.16	12.11
Bra018962.1-P	Field mustard	extracellular, vacuole	16.6	11.8
Bra019826.1-P	Field mustard	mitochondrion	19.37	9.92
Bra036745.1-P	Field mustard	nucleus	19.76	8.83
Bra030391.1-P	Field mustard	nucleus	17.0	8.6
Bra016733.1-P	Field mustard	mitochondrion	19.37	6.56
Bra039012.1-P	Field mustard	mitochondrion	19.76	5.45
Bra011109.1-P	Field mustard	mitochondrion	18.97	5.22
Bra011340.1-P	Field mustard	nucleus	1.58	4.26

Protein Annotations

EnsemblPlants:Bra027239.1	EnsemblPlants:Bra027239.1-P	EnsemblPlantsGene:Bra027239	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF16	PFAM:PF03398	UniParc:UPI0002547A22
UniProt:M4EEM7	MapMan:35.2	:	:	:	:

Description

AT3G15490 (E=6e-055) | unknown protein

Coordinates

chrA05:-:19896019..19897105

Molecular Weight (calculated)

29126.1 Da

IEP (calculated)

9.444

GRAVY (calculated)

-0.463

Length

253 amino acids

Sequence
(BLAST)

001: MMFAKKTEQK FGCYCNVFAV WSRSSRWQKA SKCKLHIQNL LCSVKVQRTR TECMVRQSRS DIAQLAPYGR FREALPKAKQ FYEDERRLLA YDQVKYFCTS
101: ILQSFSPLLN QNDVHLLPDE TKEAMAGLIF AASRIGELKE LQIIRSLFVQ RFGQKFDKDC VDLRPGNLVS SEIVKILDTT LPQDAITPEI IMAISQKYQT
201: DFITFVGSAS LNNLGNADSD TLARREKATK ENPKCLHTDR GESQERDRSK FMR

Best Arabidopsis Sequence Match ( AT3G15490.1 )
(BLAST)

001: MVRQSRSDIA QLLSYGRYSE ALPKAKQFYE DERRLSAYDQ VELFCTTILQ NISSLKYENN VDLLPEETKK AMAGIIFAAS RIGELEDLQH IRSFFVQRFG
101: LKFDKECVDL RQGNVVGFEI VKILNTNMRG DEITHIVREL SHKYKTNITT STDSISEDLA SSDDLGIADS DAMKVEKMKR ALRRKKVMKE NSKFLHPNLR
201: ESQGRDRSFR R

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q4PSP2]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.