Factsheet for Bra011340.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018962.1-P	Field mustard	extracellular, vacuole	23.4	6.18
Bra010522.1-P	Field mustard	plastid	21.28	4.75
Bra006177.1-P	Field mustard	mitochondrion	17.02	4.55
Bra011633.1-P	Field mustard	mitochondrion, plastid	20.21	4.37
Bra008502.1-P	Field mustard	nucleus	13.83	3.43
Bra039012.1-P	Field mustard	mitochondrion	21.28	2.18
Bra011109.1-P	Field mustard	mitochondrion	20.21	2.07
Bra027239.1-P	Field mustard	plastid	4.26	1.58
Bra013184.1-P	Field mustard	mitochondrion	3.19	1.24
Bra019826.1-P	Field mustard	mitochondrion	5.32	1.01
Bra036745.1-P	Field mustard	nucleus	5.32	0.88
Bra016733.1-P	Field mustard	mitochondrion	4.26	0.54
Bra021112.1-P	Field mustard	nucleus	1.06	0.42
Bra012478.1-P	Field mustard	mitochondrion	1.06	0.31
Bra030391.1-P	Field mustard	nucleus	0.0	0.0
Bra035204.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Bra011340.1	EnsemblPlants:Bra011340.1-P	EnsemblPlantsGene:Bra011340	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF29	SEG:seg	UniParc:UPI000254643C	UniProt:M4D4D6
MapMan:35.2	:	:	:	:	:

Description

AT4G32350 (E=1e-025) | unknown protein

Coordinates

chrA01:-:2656751..2657035

Molecular Weight (calculated)

10774.7 Da

IEP (calculated)

10.100

GRAVY (calculated)

-1.138

Length

94 amino acids

Sequence
(BLAST)

1: MMDKLLMHYS KKPSSYEESK SRRSHRRKAE GEEIHHPARS LSLPSEQFAG PSEPAKTFAR AASFQPERSE AKHVHPKLPD YEDLAARFAE LKGR

Best Arabidopsis Sequence Match ( AT4G32350.2 )
(BLAST)

001: MQKTPECPED CREAISSLMF AASGFSELPE LRELRQMFHE KYTDSLALFV NQELVENMSS KPFSMEKKVK LMEDVALEFS IRWDSKDFEK RIVRQNSISV
101: METPKSTNDK YKPVDRNMAL PKREEFEGSE NGVSLNRKTA EASERRDPLF QSDKESYQNG LRGNQRGLTY KERSENVLHA SRSESKDNKA ERKEFYLHSK
201: QNPAREKHQP IFNEGDTIVM KVNYGNLGQG NGHRPGVVDA HKKTEFVASE RKEFYSQSKQ EPSRERHQPI FNDGDTIVMK VKHENHVQGN GHKNGVVDLH
301: KKIEVNASEK LKSSSSKRAD KLVIGFKQES FFQGYKHEKN EEHAHQKVED STSRPPKPNS KSKRAESINP GSRHHNDRES KENAVLVGKS TEEDPSGDNV
401: KGGEYEYDHA NPARKVEERE TERMKSPFYK SLPPPYVKKS IAKARHEKAE ALDNPKARFD GEEGNHPDNG KNVYGAERRN GAGHHEVNDI DNASLKRQTN
501: RRKHIVESGG DDHISSRRRE NSRKGLQVLI DEDEKDSEEK MMDKLLMHYS KKPSSYEKDN VQEESKSRRT HLKKGESDEE MMIHQPARSR SLPAEQLAGP
601: SEPAKTFARA ASFQPERSSE AKHVHPKLPN YDDLAARFAE LKGR

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8RXT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.