Factsheet for Zm00001d028456_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92527	Sorghum	mitochondrion, plastid	85.31	84.51
Os03t0257600-01	Rice	mitochondrion	65.35	64.26
TraesCS4D01G219400.3	Wheat	mitochondrion, plastid	61.21	60.19
TraesCS4B01G219200.1	Wheat	mitochondrion, plastid	61.39	60.15
Zm00001d034058_P004	Maize	mitochondrion	21.47	60.0
TraesCS4A01G085000.1	Wheat	mitochondrion, plastid	60.08	59.63
HORVU4Hr1G062110.1	Barley	mitochondrion	61.39	59.49
Zm00001d028457_P001	Maize	mitochondrion	22.03	58.5
Zm00001d047887_P001	Maize	mitochondrion	24.67	52.61
Zm00001d047886_P001	Maize	mitochondrion	24.67	52.4
Zm00001d047885_P001	Maize	mitochondrion	24.29	51.6
Zm00001d034057_P001	Maize	mitochondrion	22.22	51.53
Zm00001d047884_P001	Maize	cytosol	12.05	44.76
VIT_14s0006g03050.t01	Wine grape	mitochondrion	12.99	44.23
Zm00001d033714_P001	Maize	mitochondrion	24.29	36.75
PGSC0003DMT400032944	Potato	mitochondrion	12.62	32.21
Solyc02g085830.2.1	Tomato	mitochondrion	12.62	32.21
PGSC0003DMT400033769	Potato	mitochondrion	24.48	30.45
KRH45249	Soybean	mitochondrion	22.6	30.3
Solyc05g009550.2.1	Tomato	mitochondrion	24.29	30.21
VIT_01s0011g03330.t01	Wine grape	mitochondrion	26.18	29.7
GSMUA_Achr6P07700_001	Banana	cytosol, mitochondrion, nucleus	23.73	29.58
Zm00001d052541_P001	Maize	extracellular	7.91	29.17
KRH75395	Soybean	mitochondrion	21.85	28.78
GSMUA_Achr6P24100_001	Banana	mitochondrion	26.18	28.43
CDY50176	Canola	mitochondrion	20.72	27.92
GSMUA_Achr10P...	Banana	mitochondrion	25.05	27.48
CDY21093	Canola	mitochondrion	20.34	27.34
CDY19375	Canola	mitochondrion	20.53	26.72
AT1G13340.1	Thale cress	mitochondrion	20.53	26.65
KRH01764	Soybean	mitochondrion	21.09	25.34
KRH46919	Soybean	mitochondrion	19.4	25.12
Zm00001d043813_P001	Maize	mitochondrion	15.07	24.92
Zm00001d028142_P001	Maize	cytosol	4.52	24.0
Zm00001d048482_P001	Maize	cytosol, mitochondrion, nucleus, plastid	4.52	24.0
Bra019826.1-P	Field mustard	mitochondrion	21.28	22.87
Zm00001d021453_P002	Maize	plastid	16.57	16.83
Zm00001d024425_P003	Maize	cytosol	17.33	16.23
Zm00001d049479_P003	Maize	cytosol, mitochondrion, plastid	16.57	16.12
Bra016733.1-P	Field mustard	mitochondrion	20.34	14.46
Zm00001d053852_P001	Maize	nucleus	13.37	10.37
Zm00001d014521_P001	Maize	mitochondrion	12.81	8.82
Zm00001d011684_P002	Maize	nucleus, plastid	16.57	7.27
Zm00001d036913_P001	Maize	cytosol	6.78	5.89
Zm00001d051744_P001	Maize	nucleus	2.82	2.99

Protein Annotations

EMBL:BT039461	EnsemblPlants:Zm00001d028456_P001	EnsemblPlants:Zm00001d028456_T001	EnsemblPlantsGene:Zm00001d028456	EntrezGene:100272798	Gene3D:1.20.1260.60
GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF17
PFAM:PF03398	ProteinID:ONL96060.1	SEG:seg	UniParc:UPI00017B76A0	UniProt:B4FQS3	MapMan:35.2

Description

Regulator of Vps4 activity in the MVB pathway protein

Coordinates

chr1:+:35502775..35505397

Molecular Weight (calculated)

57290.3 Da

IEP (calculated)

10.105

GRAVY (calculated)

-0.653

Length

531 amino acids

Sequence
(BLAST)

001: MGLFGKSTSK QTAKLKSLVK LAAARLAVVR RPRLGRRSIA RSDVGQLLSI GHLDRALVRA EQVIEEDNML EALDVIELYC KILVEQTAQL EKPKECSEEI
101: KEAAAGLMFA SARCGELPEL LDARAILADK FGRDFARAAK EGAHGVVDPT LVRKLSGERA SVEQTRRLAK EIAAENDILL EFPESPVGIH KDGRTTSQVN
201: SQRAGEETKN APARTFVEES AVKTGRREGE RNSVNGKVNP SLAQLSLDEK VLRESKKYPD ARMAAEAAFA SAKFAAMAAR AAVELSRSES HGKGSTGGGY
301: DKVPSVRTTA ATEQGTAPPL SRPHKSPSPS PSWSDRSTAT SVGSDAAHKG KEVVFDQSDE ELDDVVWPPP QRRPSYRRTA STVGTVHASA RDTGTPAAQL
401: ARPQHRRHAT ELSAGNAHAP GLHDALAGQR RQHVTPPYRR ASTASTGRNS DAAALDDGGA YESSPYVQPP YSRMASALER SNGHIARHEE VRRMGTDARA
501: LQERVYGAAA PGQGHGPLDP ERRTTSVRTR R

Best Arabidopsis Sequence Match ( AT1G13340.1 )
(BLAST)

001: MGKKLDALLG RSFKTNKFKS LITLALTRLS ILKNQRQARL SQAISDVTEL LKLGQHEHAY HRVDQVVKDQ NTLDVLFFIH GYFTLCLDRI HLFEHNRDCP
101: EELLEAVSGL LFAASRIGEF PELQEIRNVL ISRFGKDLAA RSIELRSNCG VDPKIIQKLS TRPPPKEVRM KALKEIAAEN NIVLKLDQAS TSTEGTTNMQ
201: GTSDVSKTKL TSKDGRGEGY GLSDSVKRGK KKYKDVADAA QAAFESAAHA AEAAQAAVEL SQFSPRGHDS PGNIGGENSF HGSENKESEQ EQEGNDDSSE
301: GEGDVMSESK RSMSDSEDII DVPVMSFRED PVKLLEKDTI IYDSEEETQP SVETITISKS KDEQNRMVGS NRADTRHVDH MVRSIEDPIM RKAGLKGPVS
401: VRTRQVRGY

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q9FX63]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.