Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- peroxisome 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_19s0015g01940.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G33150.1 | VIT_19s0015g01940.t01 | AT5G56290.1 | 24879895 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g091470.2.1 | Tomato | plastid | 89.8 | 89.03 |
| PGSC0003DMT400076175 | Potato | cytosol | 89.59 | 88.82 |
| AT2G33150.1 | Thale cress | cytosol | 87.42 | 87.23 |
| CDY19452 | Canola | cytosol | 86.77 | 86.39 |
| Bra005522.1-P | Field mustard | cytosol | 86.33 | 86.15 |
| CDY17140 | Canola | cytosol | 86.33 | 86.15 |
| Bra022927.1-P | Field mustard | cytosol | 85.9 | 86.09 |
| CDX79511 | Canola | cytosol | 86.12 | 85.93 |
| CDX84701 | Canola | cytosol | 85.9 | 85.71 |
| CDY23766 | Canola | cytosol | 85.9 | 85.71 |
| CDY37750 | Canola | mitochondrion | 85.9 | 85.71 |
| Bra021829.1-P | Field mustard | cytosol | 85.68 | 85.5 |
| KRH33469 | Soybean | endoplasmic reticulum, nucleus | 84.16 | 83.8 |
| KRG90241 | Soybean | nucleus | 83.51 | 83.51 |
| CDX86611 | Canola | cytosol | 81.34 | 83.15 |
| AT1G04710.1 | Thale cress | cytosol | 79.18 | 82.39 |
| Bra030586.1-P | Field mustard | mitochondrion | 80.48 | 82.26 |
| CDY15520 | Canola | mitochondrion | 80.26 | 82.04 |
| VIT_07s0005g05610.t01 | Wine grape | cytosol, mitochondrion, peroxisome, plastid | 73.75 | 76.75 |
| VIT_12s0057g01200.t01 | Wine grape | cytosol | 29.28 | 32.53 |
| VIT_00s0531g00050.t01 | Wine grape | peroxisome | 28.63 | 30.0 |
| VIT_18s0089g00570.t01 | Wine grape | extracellular | 5.42 | 18.12 |
Protein Annotations
| EntrezGene:100247651 | wikigene:100247651 | Gene3D:3.40.47.10 | MapMan:5.7.3.2.3 | EMBL:AM474896 | ProteinID:CAN81585 |
| ProteinID:CAN81585.1 | ProteinID:CBI33354 | ProteinID:CBI33354.3 | UniProt:D7TS82 | EMBL:FN596241 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016740 | GO:GO:0016746 | GO:GO:0016747 |
| InterPro:IPR016039 | EntrezGene:LOC100247651 | wikigene:LOC100247651 | PFAM:PF00108 | PFAM:PF02803 | ScanProsite:PS00098 |
| ScanProsite:PS00099 | ScanProsite:PS00737 | PANTHER:PTHR43853 | PANTHER:PTHR43853:SF4 | SUPFAM:SSF53901 | TIGR:TC57370 |
| TIGRFAMs:TIGR01930 | InterPro:Thiolase | InterPro:Thiolase-like | InterPro:Thiolase_AS | InterPro:Thiolase_C | InterPro:Thiolase_CS |
| InterPro:Thiolase_N | InterPro:Thiolase_acyl_enz_int_AS | UniParc:UPI00015C7CD5 | ArrayExpress:VIT_05s0051g00720 | EnsemblPlantsGene:VIT_05s0051g00720 | EnsemblPlants:VIT_05s0051g00720.t01 |
| unigene:Vvi.7449 | RefSeq:XP_002285653 | RefSeq:XP_002285653.1 | RefSeq:XP_002285655 | RefSeq:XP_002285655.1 | RefSeq:XP_003632023 |
| RefSeq:XP_003632023.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr5:+:11627678..11635904
Molecular Weight (calculated)
48626.4 Da
IEP (calculated)
7.318
GRAVY (calculated)
-0.037
Length
461 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKAINRQRV LLQHLSPSSS AAEDESSLSA SVCVAGDSAA YQRTSVFGDD VVIVAAYRTA LCKSKRGGFK DTYPDDLLAP VLRALLEKTN LNPNEVGDIV
101: VGTVLAPGSQ RASECRMAAF YAGFPETVPV RTVNRQCSSG LQAVADVAAA IKAGFYDIGI GAGLESMTAN PMAWEGSINP KVKEFVQAQD CLLPMGITSE
201: NVAHRFGVTR QEQDQAAVES HKRAAAATAT GKFKDEIIPV STKIVDPKTG DEKLVTISVD DGIRPNATMS DLAKLKPVFK KNGTTTAGNS SQVSDGAGAV
301: LLMKRSVAMR KGLPILGVFR TFAAVGVDPA VMGIGPAVAI PAAVKSAGLE LDDIDLFEIN EAFASQFVYC RKKLDLDPEK INVNGGAMAI GHPLGATGAR
401: CVGTLLHEMK RRGKDCRFGV VSMCIGTGMG AAAVFERGDC VDELRNARTA ENNNLLSKDA Q
101: VGTVLAPGSQ RASECRMAAF YAGFPETVPV RTVNRQCSSG LQAVADVAAA IKAGFYDIGI GAGLESMTAN PMAWEGSINP KVKEFVQAQD CLLPMGITSE
201: NVAHRFGVTR QEQDQAAVES HKRAAAATAT GKFKDEIIPV STKIVDPKTG DEKLVTISVD DGIRPNATMS DLAKLKPVFK KNGTTTAGNS SQVSDGAGAV
301: LLMKRSVAMR KGLPILGVFR TFAAVGVDPA VMGIGPAVAI PAAVKSAGLE LDDIDLFEIN EAFASQFVYC RKKLDLDPEK INVNGGAMAI GHPLGATGAR
401: CVGTLLHEMK RRGKDCRFGV VSMCIGTGMG AAAVFERGDC VDELRNARTA ENNNLLSKDA Q
001: MEKAIERQRV LLEHLRPSSS SSHNYEASLS ASACLAGDSA AYQRTSLYGD DVVIVAAHRT PLCKSKRGNF KDTYPDDLLA PVLRALIEKT NLNPSEVGDI
101: VVGTVLAPGS QRASECRMAA FYAGFPETVA VRTVNRQCSS GLQAVADVAA AIKAGFYDIG IGAGLESMTT NPMAWEGSVN PAVKKFAQAQ NCLLPMGVTS
201: ENVAQRFGVS RQEQDQAAVD SHRKAAAATA AGKFKDEIIP VKTKLVDPKT GDEKPITVSV DDGIRPTTTL ASLGKLKPVF KKDGTTTAGN SSQVSDGAGA
301: VLLMKRSVAM QKGLPVLGVF RTFAAVGVDP AIMGIGPAVA IPAAVKAAGL ELDDIDLFEI NEAFASQFVY CRNKLGLDPE KINVNGGAMA IGHPLGATGA
401: RCVATLLHEM KRRGKDCRFG VVSMCIGTGM GAAAVFERGD GVDELRNARK VEAQGLLSKD AR
101: VVGTVLAPGS QRASECRMAA FYAGFPETVA VRTVNRQCSS GLQAVADVAA AIKAGFYDIG IGAGLESMTT NPMAWEGSVN PAVKKFAQAQ NCLLPMGVTS
201: ENVAQRFGVS RQEQDQAAVD SHRKAAAATA AGKFKDEIIP VKTKLVDPKT GDEKPITVSV DDGIRPTTTL ASLGKLKPVF KKDGTTTAGN SSQVSDGAGA
301: VLLMKRSVAM QKGLPVLGVF RTFAAVGVDP AIMGIGPAVA IPAAVKAAGL ELDDIDLFEI NEAFASQFVY CRNKLGLDPE KINVNGGAMA IGHPLGATGA
401: RCVATLLHEM KRRGKDCRFG VVSMCIGTGM GAAAVFERGD GVDELRNARK VEAQGLLSKD AR
Arabidopsis Description
PED1PKT3 [Source:UniProtKB/TrEMBL;Acc:A0A178VRP9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.