Factsheet for VIT_12s0057g01200.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
peroxisome 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	peroxisome
MultiLoc:	cytosol
Plant-mPloc:	peroxisome
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14066	Soybean	endoplasmic reticulum, nucleus	85.54	87.22
KRH74050	Soybean	endoplasmic reticulum	84.82	86.49
Solyc07g045350.2.1	Tomato	extracellular, plastid, unclear	83.86	86.14
PGSC0003DMT400044777	Potato	cytosol	83.61	85.89
CDY00071	Canola	plastid	82.41	84.86
CDY19963	Canola	plastid	82.41	84.86
AT5G48230.2	Thale cress	cytosol	81.93	84.37
CDY48742	Canola	plastid	81.93	84.37
GSMUA_Achr1P16400_001	Banana	mitochondrion	77.11	83.99
Bra020710.1-P	Field mustard	cytosol, plastid	81.45	83.87
PGSC0003DMT400028289	Potato	cytosol	80.96	83.17
Os09t0252100-01	Rice	plastid	80.0	82.79
GSMUA_Achr1P09500_001	Banana	cytosol, peroxisome, plastid	80.0	82.79
TraesCS5B01G166200.2	Wheat	cytosol, mitochondrion, peroxisome	78.8	82.16
TraesCS2D01G035400.2	Wheat	cytosol	79.28	82.04
Zm00001d047224_P003	Maize	cytosol	72.05	81.92
TraesCS2A01G036300.1	Wheat	cytosol, mitochondrion, peroxisome	79.04	81.8
TraesCS5D01G173800.1	Wheat	cytosol	78.31	81.66
TraesCS2B01G049200.1	Wheat	golgi	78.8	81.55
KXG24143	Sorghum	cytosol	78.8	81.55
TraesCS5A01G169400.1	Wheat	cytosol, mitochondrion, peroxisome	78.07	81.41
Solyc05g017760.2.1	Tomato	plastid, unclear	79.76	81.33
Zm00001d031212_P004	Maize	cytosol, peroxisome, plastid	78.07	80.8
GSMUA_Achr1P19180_001	Banana	peroxisome	80.0	80.78
KXG39211	Sorghum	cytosol, peroxisome, plastid	77.59	80.3
Bra037501.1-P	Field mustard	mitochondrion, plastid	82.17	80.24
CDX85319	Canola	mitochondrion	81.69	79.76
Bra036182.1-P	Field mustard	plastid	82.41	79.35
HORVU5Hr1G052090.10	Barley	endoplasmic reticulum, vacuole	78.55	79.32
CDX86320	Canola	mitochondrion	81.2	79.29
VIT_00s0531g00050.t01	Wine grape	peroxisome	81.93	77.27
KXG32103	Sorghum	cytosol	75.9	74.82
TraesCS3B01G008700.1	Wheat	cytosol	74.22	73.68
TraesCS3D01G005500.1	Wheat	cytosol	73.98	73.44
TraesCS3A01G003800.1	Wheat	cytosol	73.73	73.21
Os01t0110400-01	Rice	cytosol	73.25	73.08
Zm00001d029416_P001	Maize	peroxisome	77.35	72.46
HORVU2Hr1G005420.1	Barley	mitochondrion, peroxisome, plastid	55.66	71.74
Zm00001d008432_P003	Maize	mitochondrion	75.66	68.86
CDY05693	Canola	cytosol, mitochondrion, peroxisome	48.19	61.16
HORVU3Hr1G000760.3	Barley	peroxisome	62.17	60.14
VIT_18s0089g00570.t01	Wine grape	extracellular	14.7	44.2
VIT_07s0005g05610.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	32.53	30.47
VIT_05s0051g00720.t01	Wine grape	cytosol	32.53	29.28

Protein Annotations

EntrezGene:100240809	wikigene:100240809	Gene3D:3.40.47.10	MapMan:9.1.1.1	ProteinID:CCB51753	ProteinID:CCB51753.1
UniProt:F6HHQ7	EMBL:FN595759	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0003985
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0005829
GO:GO:0005886	GO:GO:0006629	GO:GO:0006635	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009653	GO:GO:0009846	GO:GO:0009856	GO:GO:0009860	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0016049	GO:GO:0016125	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747
GO:GO:0030154	GO:GO:0040007	InterPro:IPR016039	EntrezGene:LOC100240809	wikigene:LOC100240809	PFAM:PF00108
PFAM:PF02803	PIRSF:PIRSF000429	ScanProsite:PS00099	ScanProsite:PS00737	PANTHER:PTHR18919	PANTHER:PTHR18919:SF131
SUPFAM:SSF53901	TIGR:TC52127	TIGRFAMs:TIGR01930	InterPro:Thiolase	InterPro:Thiolase-like	InterPro:Thiolase_AS
InterPro:Thiolase_C	InterPro:Thiolase_CS	InterPro:Thiolase_N	UniParc:UPI00021090A8	ArrayExpress:VIT_12s0057g01200	EnsemblPlantsGene:VIT_12s0057g01200
EnsemblPlants:VIT_12s0057g01200.t01	unigene:Vvi.7440	RefSeq:XP_002265690	RefSeq:XP_002265690.1	SEG:seg	:

Description

No Description!

Coordinates

chr12:+:9967097..9973949

Molecular Weight (calculated)

42342.1 Da

IEP (calculated)

6.056

GRAVY (calculated)

0.261

Length

415 amino acids

Sequence
(BLAST)

001: MDGKVMIECS LMAPAAAASI KPRDVCIVGV ARTPMGGFLG TLSSLSATKL GSIAIEAALK RANVDASLVQ EVFFGNVLSA NLGQAPARQA ALGAGIPNSV
101: VCTTINKVCA SGMKATMLAA QSIQLGVNDI VVSGGMESMS NVPKYLAEAR KGSRFGHDSL VDGMLKDGLW DVYSDTGMGV CAELCADNHV ISREEQDAYA
201: IHSFERGIAA QDGGAFAWEI VPVEVSGGRG RPSTIVDKDE GLGKFDPVKL KKLRPSFKEN GGSVTAGNAS SISDGAAALV LVSGEKALQL GLSVIAKIAG
301: YADAAQAPEL FTTAPALAIP KAISNAGLEA SQIDYYEINE AFAVVALANQ KLLGLSPEKV NVHGGAVSLG HPLGCSGARI LVTLLGVLRQ KDGKYGVGGV
401: CNGGGGASAL VVELV

Best Arabidopsis Sequence Match ( AT5G48230.2 )
(BLAST)

001: MAHTSESVNP RDVCIVGVAR TPMGGFLGSL SSLPATKLGS LAIAAALKRA NVDPALVQEV VFGNVLSANL GQAPARQAAL GAGIPNSVIC TTVNKVCASG
101: MKAVMIAAQS IQLGINDVVV AGGMESMSNT PKYLAEARKG SRFGHDSLVD GMLKDGLWDV YNDCGMGSCA ELCAEKFQIT REQQDDYAVQ SFERGIAAQE
201: AGAFTWEIVP VEVSGGRGRP STIVDKDEGL GKFDAAKLRK LRPSFKENGG TVTAGNASSI SDGAAALVLV SGEKALQLGL LVLAKIKGYG DAAQEPEFFT
301: TAPALAIPKA IAHAGLESSQ VDYYEINEAF AVVALANQKL LGIAPEKVNV NGGAVSLGHP LGCSGARILI TLLGILKKRN GKYGVGGVCN GGGGASALVL
401: ELL

Arabidopsis Description

AAT1AT5G48230 protein [Source:UniProtKB/TrEMBL;Acc:B9DGQ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.