Factsheet for Zm00001d011971_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome

Predictor Summary:

peroxisome 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, peroxisome
Any Predictor:	peroxisome
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	peroxisome

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34022	Sorghum	peroxisome	93.4	91.5
Os01t0925200-01	Rice	nucleus, plasma membrane	85.42	84.54
TraesCS3A01G438000.1	Wheat	peroxisome	84.38	83.79
TraesCS3D01G430300.1	Wheat	peroxisome	84.03	83.45
TraesCS3B01G472000.1	Wheat	peroxisome	84.03	83.45
TraesCS3D01G430400.2	Wheat	peroxisome	82.99	82.41
TraesCS3A01G438100.1	Wheat	peroxisome	82.99	82.41
GSMUA_Achr7P22470_001	Banana	peroxisome	64.24	64.01
Bra027479.1-P	Field mustard	peroxisome	54.17	56.52
CDY43605	Canola	peroxisome	53.82	56.16
CDY32958	Canola	peroxisome	53.47	55.8
AT5G43280.1	Thale cress	peroxisome	53.12	55.04
KRH66641	Soybean	peroxisome	51.39	54.21
VIT_01s0146g00270.t01	Wine grape	peroxisome	50.35	52.73
Solyc05g024240.2.1	Tomato	nucleus	38.54	47.84
Zm00001d017459_P002	Maize	mitochondrion	28.12	26.73
Zm00001d017458_P003	Maize	mitochondrion	26.74	23.69
Zm00001d028909_P001	Maize	extracellular, mitochondrion	20.83	22.3
Zm00001d043970_P001	Maize	mitochondrion	25.35	21.73
Zm00001d037939_P003	Maize	peroxisome	22.92	9.19
Zm00001d053308_P009	Maize	peroxisome	22.22	8.32
Zm00001d009182_P009	Maize	extracellular, mitochondrion, peroxisome, plasma membrane	20.49	8.16
Zm00001d015992_P001	Maize	peroxisome	22.57	5.41
Zm00001d012590_P001	Maize	extracellular	2.78	2.68

Protein Annotations

Gene3D:1.10.12.10	EntrezGene:100192936	Gene3D:3.90.226.10	MapMan:5.7.3.5.2	ProteinID:AQK98422.1	UniProt:B4FD65
EMBL:BT035053	InterPro:ClpP/crotonase-like_dom_sf	InterPro:Enoyl-CoA_hydra/iso	InterPro:Enoyl-CoA_hydra_C	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0008150
GO:GO:0008152	GO:GO:0016853	GO:GO:0051750	InterPro:IPR014748	PFAM:PF00378	PANTHER:PTHR43149
PANTHER:PTHR43149:SF1	SUPFAM:SSF52096	UniParc:UPI00017B6646	EnsemblPlantsGene:Zm00001d011971	EnsemblPlants:Zm00001d011971_P001	EnsemblPlants:Zm00001d011971_T001
SEG:seg	:	:	:	:	:

Description

Delta3,5-delta2,4-dienoyl-CoA isomerase [Source:UniProtKB/TrEMBL;Acc:B4FD65]

Coordinates

chr8:-:165343810..165345886

Molecular Weight (calculated)

30170.5 Da

IEP (calculated)

8.123

GRAVY (calculated)

0.079

Length

288 amino acids

Sequence
(BLAST)

001: MAGGGDRDAS DAELRAGFET LAVTRPDPSA GVYEVRLNRP AQRNALSPAA FAEIPRAMSL LDRAPSARAV VLSAAGPHFC AGIELGGPGD PLSAASADPV
101: AAAEGLRRAV LDMQAALTAI ERCRKPVVAA VHGACVGGGV DLVAACDIRC CSRDASFVLK EVDMAIVADL GALQRLPRIV GYGNAADLAL TGRKINAMEA
201: KDMGLVTRVF DSKQDLDAGV AKIAKEIADK SAWAVIGTKA VLLRSRDATI EQGLEHVATW NAGMMRSNDL KEAIRAFLEK RKPVFSKL

Best Arabidopsis Sequence Match ( AT5G43280.1 )
(BLAST)

001: MTMESYKTLE IIRKNTDSSV FHLIINRPSH LNALSLDFFI EFPKALSSLD QNPDVSVIIL SGAGKHFCSG IDLNSLSSIS TQSSSGNDRG RSSEQLRRKI
101: KSMQAAITAI EQCRKPVIAA IHGACIGGGV DLITACDIRY CSEDAFFSIK EVDLAIVADL GTLQRLPSIV GYANAMELAL TARRFSGSEA KDLGLVSKVF
201: GSKSELDNGV TTIAEGIGGK SPLAVTGTKA VLLRSREVSV EQGLDYVATW NSAMLISDDL NEAVSAQMMK RKPRFAKL

Arabidopsis Description

DCI1Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q9FHR8]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.