Factsheet for Zm00001d028909_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

plastid 1
peroxisome 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	peroxisome, plastid
ChloroP:	plastid
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	peroxisome

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94969	Sorghum	peroxisome, plastid	95.17	95.52
Os03t0310400-01	Rice	extracellular, nucleus, plasma membrane	86.62	86.94
TraesCS4D01G183100.1	Wheat	peroxisome	84.01	84.33
TraesCS4B01G182600.1	Wheat	peroxisome	84.01	84.33
TraesCS4A01G122800.1	Wheat	peroxisome	84.01	84.33
HORVU4Hr1G053180.1	Barley	peroxisome	83.64	83.96
GSMUA_Achr8P10700_001	Banana	mitochondrion, peroxisome, plastid	72.86	74.24
GSMUA_Achr11P...	Banana	mitochondrion, peroxisome, plasma membrane	72.49	74.14
VIT_05s0077g00860.t01	Wine grape	peroxisome, plastid	72.86	73.68
KRH50717	Soybean	mitochondrion, peroxisome	29.74	68.97
KRH02364	Soybean	peroxisome	66.91	67.92
PGSC0003DMT400003039	Potato	cytosol	64.68	65.66
AT4G16210.1	Thale cress	peroxisome	63.57	64.53
CDY09705	Canola	cytosol, mitochondrion, peroxisome	62.08	64.48
CDX90535	Canola	peroxisome	62.08	64.48
Solyc01g059830.2.1	Tomato	nucleus, plastid	63.2	64.15
Bra012731.1-P	Field mustard	cytosol, peroxisome, plasma membrane	61.71	64.09
KRH50718	Soybean	plastid	37.55	60.84
Zm00001d017459_P002	Maize	mitochondrion	26.02	23.1
Zm00001d011971_P001	Maize	mitochondrion, peroxisome	22.3	20.83
Zm00001d043970_P001	Maize	mitochondrion	26.02	20.83
Zm00001d017458_P003	Maize	mitochondrion	24.91	20.62
Zm00001d037939_P003	Maize	peroxisome	23.05	8.64
Zm00001d009182_P009	Maize	extracellular, mitochondrion, peroxisome, plasma membrane	23.05	8.58
Zm00001d053308_P009	Maize	peroxisome	22.3	7.8
Zm00001d015992_P001	Maize	peroxisome	21.56	4.83
Zm00001d012590_P001	Maize	extracellular	4.09	3.68

Protein Annotations

Gene3D:3.90.226.10	MapMan:35.1	EMBL:BT064619	UniProt:C0P8K0	InterPro:ClpP/crotonase-like_dom_sf	InterPro:Enoyl-CoA_hydra/iso
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005777	GO:GO:0008150	GO:GO:0008152	ProteinID:ONL97361.1	PFAM:PF00378	PANTHER:PTHR43802
SUPFAM:SSF52096	UniParc:UPI0001948BCE	EnsemblPlantsGene:Zm00001d028909	EnsemblPlants:Zm00001d028909_P001	EnsemblPlants:Zm00001d028909_T001	SEG:seg

Description

No Description!

Coordinates

chr1:+:50719302..50721399

Molecular Weight (calculated)

28874.0 Da

IEP (calculated)

8.933

GRAVY (calculated)

0.044

Length

269 amino acids

Sequence
(BLAST)

001: MGTASPDSGD LIEVGPARPG SPVAVVTINR PSALNALTKP MMISMAAAFR RLGADDAVAA VVLAGRGRAF CSGVDLTAAA EVFKGDVKDV ATDPVVQMEL
101: CRKPIVGAIA GFAVTAGFEI ALACDILVAG RSTKFLDTHA KFGIFPSWGL SQKLSRIIGP NRAREVSLTC MPVTAEMAER WGLVNHVVDD NEVLSKAIEV
201: AEAIVRNNRN LVVLYKSVIN DGFKLDLEHA QALEKERGHN YYNGMTKEQF TNMQKFIQGR SSKKTPSKL

Best Arabidopsis Sequence Match ( AT4G16210.1 )
(BLAST)

001: MDQTVSENLI QVKKESGGIA VITINRPKSL NSLTRAMMVD LAKAFKDMDS DESVQVVIFT GSGRSFCSGV DLTAAESVFK GDVKDPETDP VVQMERLRKP
101: IIGAINGFAI TAGFELALAC DILVASRGAK FMDTHARFGI FPSWGLSQKL SRIIGANKAR EVSLTSMPLT ADVAGKLGFV NHVVEEGEAL KKAREIAEAI
201: IKNEQGMVLR IKSVINDGLK LDLGHALTLE KERAHAYYSG MTKEQFRKMQ EFIAGRGSKK PSSKL

Arabidopsis Description

ECHIAProbable enoyl-CoA hydratase 1, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q6NL24]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.