Factsheet for Os02t0274100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
peroxisome 5
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

peroxisome: 16313672

nucleus: 19621931
cytosol: 19685898
golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797

gfp PMID: 16313672 doi

SD Chuong, NI Park, MC Freeman, RT Mullen, DG Muench

Department of Biological Sciences, University of Calgary, Calgary, AB, T2N 1N4, Canada.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04919	Sorghum	peroxisome	89.12	89.0
TraesCS6B01G153900.1	Wheat	peroxisome	88.84	88.84
TraesCS6D01G116200.1	Wheat	golgi, peroxisome	88.43	88.43
HORVU6Hr1G024100.1	Barley	peroxisome	88.02	88.02
TraesCS6A01G125800.1	Wheat	golgi	87.88	87.88
TraesCS3D01G077200.1	Wheat	peroxisome	88.02	87.53
HORVU3Hr1G013880.1	Barley	peroxisome	87.47	87.23
TraesCS3A01G077000.3	Wheat	peroxisome	87.88	85.75
TraesCS3B01G091200.1	Wheat	endoplasmic reticulum, vacuole	80.72	84.56
Zm00001d053308_P009	Maize	peroxisome	87.33	82.44
GSMUA_Achr7P14420_001	Banana	peroxisome	75.9	76.0
GSMUA_Achr8P19760_001	Banana	peroxisome	70.66	70.18
CDY06852	Canola	peroxisome	68.46	68.84
CDY35240	Canola	peroxisome	68.32	68.7
Bra011076.1-P	Field mustard	peroxisome	68.32	68.7
Solyc07g019670.2.1	Tomato	plastid	68.32	68.6
VIT_11s0016g03690.t01	Wine grape	peroxisome	68.04	68.23
KRH48371	Soybean	nucleus	67.91	68.09
CDY66477	Canola	peroxisome	67.49	67.96
CDX97462	Canola	peroxisome	67.49	67.96
KRH39301	Soybean	endoplasmic reticulum, mitochondrion, nucleus	66.94	67.13
PGSC0003DMT400001017	Potato	cytosol	66.8	66.99
AT4G29010.1	Thale cress	peroxisome	66.39	66.85
Solyc12g007170.1.1	Tomato	plastid	66.53	66.71
CDY69211	Canola	mitochondrion, peroxisome	55.79	66.39
Bra010347.1-P	Field mustard	peroxisome	66.94	66.21
Bra024170.1-P	Field mustard	peroxisome	63.64	62.69
Solyc08g068390.2.1	Tomato	peroxisome	59.78	61.13
PGSC0003DMT400014020	Potato	peroxisome	60.19	60.61
PGSC0003DMT400009982	Potato	peroxisome	59.23	60.39
CDX92908	Canola	peroxisome	64.05	59.09
Os01t0348600-01	Rice	cytosol	58.54	58.46
Os05t0362100-01	Rice	cytosol, mitochondrion, peroxisome	36.09	56.34
Os05t0155000-01	Rice	peroxisome	55.65	55.8
Zm00001d015992_P001	Maize	peroxisome	87.74	52.99
Os01t0796400-01	Rice	nucleus	12.4	29.8
Os02t0654000-01	Rice	mitochondrion	10.88	26.87
Os03t0310400-01	Rice	extracellular, nucleus, plasma membrane	9.09	24.63
Os02t0654100-01	Rice	mitochondrion	10.06	24.33
Os01t0925200-01	Rice	nucleus, plasma membrane	9.23	23.02
Os01t0662700-01	Rice	mitochondrion	9.92	21.75

Protein Annotations

KEGG:00062+4.2.1.17+1.1.1.35	KEGG:00071+4.2.1.17+1.1.1.35	KEGG:00071+5.1.2.3+4.2.1.17+1.1.1.35	KEGG:00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8	KEGG:00120+1.1.1.35	KEGG:00280+4.2.1.17+1.1.1.35
KEGG:00281+4.2.1.17+1.1.1.35	KEGG:00310+4.2.1.17+1.1.1.35	KEGG:00360+4.2.1.17	KEGG:00362+4.2.1.17+1.1.1.35	KEGG:00380+4.2.1.17+1.1.1.35	KEGG:00410+4.2.1.17
KEGG:00592+4.2.1.17	KEGG:00623+1.1.1.35	KEGG:00627+4.2.1.17	KEGG:00640+4.2.1.17	KEGG:00650+4.2.1.17+1.1.1.35	KEGG:00650+5.1.2.3+4.2.1.17+1.1.1.35
KEGG:00720+4.2.1.17+1.1.1.35	KEGG:00903+4.2.1.17	KEGG:00930+4.2.1.17+1.1.1.35	Gene3D:1.10.1040.50	InterPro:3-OHacyl-CoA_DH_CS	InterPro:3-OHacyl-CoA_DH_NAD-bd
Gene3D:3.40.50.720	Gene3D:3.90.226.10	InterPro:3HC_DH_C	EntrezGene:4328997	MapMan:5.7.3.2.2	InterPro:6-PGluconate_DH-like_C_sf
EMBL:AF220609	EMBL:AF442962	InterPro:AIM1	ProteinID:BAD21833.1	ProteinID:BAF08450.1	ProteinID:BAS78079.1
ProteinID:BAS78080.1	InterPro:ClpP/crotonase-like_dom_sf	ncoils:Coil	InterPro:Enoyl-CoA_hyd/isom_CS	InterPro:Enoyl-CoA_hydra/iso	GO:GO:0000003
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003824
GO:GO:0003857	GO:GO:0004165	GO:GO:0004300	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0005856
GO:GO:0005874	GO:GO:0006629	GO:GO:0006631	GO:GO:0006635	GO:GO:0007275	GO:GO:0008017
GO:GO:0008150	GO:GO:0008152	GO:GO:0008692	GO:GO:0009056	GO:GO:0009058	GO:GO:0009506
GO:GO:0009507	GO:GO:0009536	GO:GO:0009695	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987
GO:GO:0016491	GO:GO:0016829	GO:GO:0016853	GO:GO:0018812	GO:GO:0030312	GO:GO:0055114
GO:GO:0070403	EMBL:JX134101	InterPro:NAD(P)-bd_dom_sf	EnsemblPlantsGene:Os02g0274100	EnsemblPlants:Os02t0274100-01	PFAM:PF00378
PFAM:PF00725	PFAM:PF02737	ScanProsite:PS00067	ScanProsite:PS00166	PANTHER:PTHR23309	PANTHER:PTHR23309:SF10
UniProt:Q8W1L6	UniProt:S4U008	SUPFAM:SSF48179	SUPFAM:SSF51735	SUPFAM:SSF52096	UniParc:UPI0000377D04
RefSeq:XP_015625624.1	SEG:seg	:	:	:	:

Description

ABNORMAL INFLORESCENCE MERISTEM13-hydroxyacyl-CoA dehydrogenase, Multifunctional protein, RNA- and microtubule-binding protein, Salicylic acid (SA) biosynthesis, Maintenance of root meristem activity, Beta -oxidation of fatty acids (Os02t0274100-01);Similar to Peroxisomal fatty acid beta-oxidation multifunctional protein. (Os02t0274100-02)

Coordinates

chr2:+:10001543..10010228

Molecular Weight (calculated)

78465.4 Da

IEP (calculated)

9.417

GRAVY (calculated)

0.065

Length

726 amino acids

Sequence
(BLAST)

001: MAGAIRVTME VGADGVAVVT ICNPPVNALH PIIIQGLKEK YAEAMDRDDV KAIVLTGAGG KFCGGFDINV FTEVHKTGNV SLMPDVSVEL VSNLMEAGKK
101: PSVAAIQGLA LGGGLELTMG CHARISTPEA QLGLPELTLG IIPGFGGTQR LPRLVGLPKA IEMMLQSKFI TAKEGKEGGL VDALCSPDEL IKMSRLWALE
201: IANYRKPWIR SLARTDRLGS LSEARSVLNS ARQQAKKVAA NLPQHQACLD VMEEGVLCGG HAGVLKEAKV FKELVLSPTS KALVHAFFAQ RLTTKVPGVT
301: DVQLKPRKIR KVAVIGGGLM GSGIATALLV SNTSVVLKEV NPQFLQRGQK MIAANLEGLV KRGSLTKDKM NKAMSLLKGA LDYSDFKDVD MVIEAVIEKI
401: PLKQSIFSDL EKVCPPHCIL ATNTSTIDLN VVGEKTNSQD RIIGAHFFSP AHIMPLLEIV RTEKTSPQAI LDLITVGKMI KKVPVVVGNC TGFAVNRTFF
501: PYTQGSHLLV SIGIDVFRID RVISSFGMPM GPFQLQDLAG YGVALAVKDI YAAAFGTRNL DSNLVDLMVQ NGRQGKSNGK GYYLYEKGGK PKPDPSVQVV
601: IDEYRRCAKT MPGGKPVTLS DQDILEMIFF PVVNEACRVM DENVVIRASD LDIASILGMG FPKFRGGLVF WADTIGAPYI HSKLSKWTEI YGDFFKPSSY
701: LEDRAKRSLP LSAPNATQQA SSRSRM

Best Arabidopsis Sequence Match ( AT4G29010.1 )
(BLAST)

001: MAKKIGVTME VGNDGVAVIT ISNPPVNSLA SPIISGLKEK FRDANQRNDV KAIVLIGNNG RFSGGFDINV FQQVHKTGDL SLMPEVSVEL VCNLMEDSRK
101: PVVAAVEGLA LGGGLELAMA CHARVAAPKA QLGLPELTLG VIPGFGGTQR LPRLVGLAKA TDMILLSKSI SSEEGHKLGL IDALVPPGDV LSTSRKWALD
201: IAEGRKPFLQ SLHRTDKIGS LSEARAILKN SRQLAKKIAP NMPQHHACIE VIEEGIIHGG YSGVLKEAEV FKQLVLSDTA KGLVHVFFAQ RATSKVPNVT
301: DVGLKPRPIK KVAVIGGGLM GSGIATALLL SNIRVVLKEI NSEFLMKGIK SVEANMKSLV SRGKLTQDKA GKALSLFKGV LDYTEFNDVD MVIEAVIENI
401: QLKQNIFKEI EKVCSPHCIL ASNTSTIDLD VIGEKTNSKD RIVGAHFFSP AHLMPLLEIV RSKNTSAQVI LDLMAVGKAI KKVPVVVGNC IGFAVNRTFF
501: PYSQAAHMLA NLGVDLFRID SVITSFGLPL GPFQLGDLAG HGIGLAVGPI YAKVYGDRMF RSPMTELLLK SGRNGKINGR GYYIYEKGSK PKPDPSVLSI
601: VEKSRKLTNI MPGGKPISVT DKEIVEMILF PVVNEACRVL DEGVVIRASD LDIASVLGMS FPSYRGGIVF WADTVGPKYI YERLKKLSET YGSFFKPSRY
701: LEERAMNGML LSESKSSRSK L

Arabidopsis Description

AIM1Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPI6]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.