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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • peroxisome 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, peroxisome
BaCelLo:cytosol
EpiLoc:peroxisome
iPSORT:mitochondrion
MultiLoc:peroxisome
Plant-mPloc:peroxisome
PProwler:peroxisome
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc12g007170.1.1 Tomato plastid 96.96 96.96
KRH48371 Soybean nucleus 76.24 76.24
VIT_11s0016g03690.t01 Wine grape peroxisome 75.83 75.83
KRH39301 Soybean endoplasmic reticulum, mitochondrion, nucleus 75.55 75.55
Bra011076.1-P Field mustard peroxisome 73.34 73.55
CDY35240 Canola peroxisome 73.34 73.55
CDX97462 Canola peroxisome 73.2 73.51
CDY66477 Canola peroxisome 73.2 73.51
CDY06852 Canola peroxisome 73.2 73.41
AT4G29010.1 Thale cress peroxisome 72.79 73.09
CDY69211 Canola mitochondrion, peroxisome 61.05 72.46
Bra010347.1-P Field mustard peroxisome 72.51 71.53
GSMUA_Achr7P14420_001 Banana peroxisome 71.27 71.17
Bra024170.1-P Field mustard peroxisome 69.61 68.39
TraesCS6B01G153900.1 Wheat peroxisome 67.82 67.63
EES04919 Sorghum peroxisome 67.82 67.54
TraesCS6D01G116200.1 Wheat golgi, peroxisome 67.54 67.36
TraesCS6A01G125800.1 Wheat golgi 67.13 66.94
Os02t0274100-01 Rice plasma membrane 66.99 66.8
HORVU3Hr1G013880.1 Barley peroxisome 67.13 66.76
TraesCS3D01G077200.1 Wheat peroxisome 67.13 66.58
HORVU6Hr1G024100.1 Barley peroxisome 66.3 66.12
TraesCS3A01G077000.3 Wheat peroxisome 67.27 65.46
GSMUA_Achr8P19760_001 Banana peroxisome 66.02 65.39
TraesCS3B01G091200.1 Wheat endoplasmic reticulum, vacuole 62.57 65.37
CDX92908 Canola peroxisome 69.2 63.66
Zm00001d053308_P009 Maize peroxisome 66.71 62.81
PGSC0003DMT400009982 Potato peroxisome 61.05 62.08
PGSC0003DMT400014020 Potato peroxisome 61.46 61.72
PGSC0003DMT400011792 Potato peroxisome 58.15 57.91
PGSC0003DMT400029427 Potato endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole 19.61 50.35
PGSC0003DMT400046197 Potato cytosol 19.2 48.43
Zm00001d015992_P001 Maize peroxisome 66.71 40.18
PGSC0003DMT400032309 Potato peroxisome 11.19 27.36
PGSC0003DMT400003039 Potato cytosol 9.39 25.66
PGSC0003DMT400067466 Potato mitochondrion 9.25 21.54
PGSC0003DMT400035160 Potato mitochondrion 9.81 20.88
Protein Annotations
KEGG:00062+4.2.1.17+1.1.1.35KEGG:00071+4.2.1.17+1.1.1.35KEGG:00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8KEGG:00120+1.1.1.35KEGG:00280+4.2.1.17+1.1.1.35KEGG:00281+4.2.1.17+1.1.1.35
KEGG:00310+4.2.1.17+1.1.1.35KEGG:00360+4.2.1.17KEGG:00362+4.2.1.17+1.1.1.35KEGG:00380+4.2.1.17+1.1.1.35KEGG:00410+4.2.1.17KEGG:00592+4.2.1.17
KEGG:00623+1.1.1.35KEGG:00627+4.2.1.17KEGG:00640+4.2.1.17KEGG:00650+4.2.1.17+1.1.1.35KEGG:00650+5.1.2.3+4.2.1.17+1.1.1.35KEGG:00720+4.2.1.17+1.1.1.35
KEGG:00903+4.2.1.17KEGG:00930+4.2.1.17+1.1.1.35Gene3D:1.10.1040.50EntrezGene:102596014InterPro:3-OHacyl-CoA_DH_NAD-bdGene3D:3.40.50.720
Gene3D:3.90.226.10InterPro:3HC_DH_CMapMan:5.7.3.2.2InterPro:6-PGluconate_DH-like_C_sfInterPro:AIM1InterPro:ClpP/crotonase-like_dom_sf
InterPro:Enoyl-CoA_hyd/isom_CSInterPro:Enoyl-CoA_hydra/isoGO:GO:0000003GO:GO:0003674GO:GO:0003824GO:GO:0003857
GO:GO:0004300GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005618GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005777GO:GO:0006629GO:GO:0006631GO:GO:0006635
GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009058GO:GO:0009506
GO:GO:0009507GO:GO:0009536GO:GO:0009695GO:GO:0009791GO:GO:0009908GO:GO:0009987
GO:GO:0016491GO:GO:0030312GO:GO:0055114InterPro:IPR000048InterPro:IQ_motif_EF-hand-BSUniProt:M0ZHQ8
InterPro:NAD(P)-bd_dom_sfPFAM:PF00378PFAM:PF00725PFAM:PF02737EnsemblPlantsGene:PGSC0003DMG400000376PGSC:PGSC0003DMG400000376
EnsemblPlants:PGSC0003DMT400001017ScanProsite:PS00166PFscan:PS50096PANTHER:PTHR23309PANTHER:PTHR23309:SF10SUPFAM:SSF48179
SUPFAM:SSF51735SUPFAM:SSF52096UniParc:UPI0002964EDBRefSeq:XP_006353465.1SEG:seg:
Description
3-hydroxyacyl-CoA dehyrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400000376]
Coordinates
chr12:-:4414682..4424524
Molecular Weight (calculated)
78670.6 Da
IEP (calculated)
9.794
GRAVY (calculated)
0.058
Length
724 amino acids
Sequence
(BLAST)
001: MAKAKVTMEV GNDGVAVITF VNPPVNALAI QIFAGLKEKW NEAAMRNDVK AIVLTGYGGR FSGGFDINVF EKVHKTDDVS LLPDVSVDLV MNIMEDGKKP
101: AVAAVEGLCL GGGLELALGC HARIAAPRTQ LGLPELSLGV LPGSGGTQRL PRLIGLPKAI DMMMTSKPIM SEEGEKLGLI DAVVPSKELL KVARQWALDI
201: AERRKRWMRS LHRIDKIGSL SEAHEVLKLA RKQVKQTARN MPQHLACLDV IEEGIVHGGY NGVLKEAKVF EDLVLSDTSR GLVHVFFAQR ATSKVPNVTD
301: IGLKPRPVKK VAIIGGGLMG SGIATSLVLS NIFVIIKEIN PEYLQKGIKT VEANIRGLVA RKKLQQDKAN KAFSMVKGVL DYSEFKDVDM VIEAVIENVP
401: LKQQIFIDIE KVCPPHCILA SNTSTIDLNV IGKKTSSQDR VIGAHFFSPA HVMPLLEIIR TEKTSAQAIL DLMAVGKTIK KVPVVVGNCT GFAVNRTFFP
501: YAQSAQFLAN LGVDVYRIDA QIISFGLPIG PFQLQDLAGY GVAIATGKEN SSAFPDRIFK SPLLDLLIKS GRNGKNNGKG YYIYKKGEKA RPDPSVLPII
601: EESRRLTNIM PGGKPISITD QEIVEMILFP VVNEACRVLD EGVVIRPSDL DVASVLGMSF PSYRGGIVFW GDTVGAGHIY KSLRKWSELY GNFFKPSKFL
701: EERAAKGIPL SAPAATSSAS RSRM
Best Arabidopsis Sequence Match ( AT4G29010.1 )
(BLAST)
001: MAKKIGVTME VGNDGVAVIT ISNPPVNSLA SPIISGLKEK FRDANQRNDV KAIVLIGNNG RFSGGFDINV FQQVHKTGDL SLMPEVSVEL VCNLMEDSRK
101: PVVAAVEGLA LGGGLELAMA CHARVAAPKA QLGLPELTLG VIPGFGGTQR LPRLVGLAKA TDMILLSKSI SSEEGHKLGL IDALVPPGDV LSTSRKWALD
201: IAEGRKPFLQ SLHRTDKIGS LSEARAILKN SRQLAKKIAP NMPQHHACIE VIEEGIIHGG YSGVLKEAEV FKQLVLSDTA KGLVHVFFAQ RATSKVPNVT
301: DVGLKPRPIK KVAVIGGGLM GSGIATALLL SNIRVVLKEI NSEFLMKGIK SVEANMKSLV SRGKLTQDKA GKALSLFKGV LDYTEFNDVD MVIEAVIENI
401: QLKQNIFKEI EKVCSPHCIL ASNTSTIDLD VIGEKTNSKD RIVGAHFFSP AHLMPLLEIV RSKNTSAQVI LDLMAVGKAI KKVPVVVGNC IGFAVNRTFF
501: PYSQAAHMLA NLGVDLFRID SVITSFGLPL GPFQLGDLAG HGIGLAVGPI YAKVYGDRMF RSPMTELLLK SGRNGKINGR GYYIYEKGSK PKPDPSVLSI
601: VEKSRKLTNI MPGGKPISVT DKEIVEMILF PVVNEACRVL DEGVVIRASD LDIASVLGMS FPSYRGGIVF WADTVGPKYI YERLKKLSET YGSFFKPSRY
701: LEERAMNGML LSESKSSRSK L
Arabidopsis Description
AIM1Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPI6]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.