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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • cytosol 3
  • peroxisome 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, peroxisome
BaCelLo:cytosol
EpiLoc:peroxisome
iPSORT:mitochondrion
MultiLoc:peroxisome
Plant-mPloc:peroxisome
PProwler:peroxisome
WoLF PSORT:cytosol
YLoc:cytosol
 plastid: 20363867
plastid: 22908117
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400001017 Potato cytosol 96.96 96.96
Solyc07g019670.2.1 Tomato plastid 83.43 83.54
VIT_11s0016g03690.t01 Wine grape peroxisome 76.8 76.8
KRH48371 Soybean nucleus 76.24 76.24
KRH39301 Soybean endoplasmic reticulum, mitochondrion, nucleus 75.55 75.55
Bra011076.1-P Field mustard peroxisome 73.48 73.68
CDY35240 Canola peroxisome 73.48 73.68
CDY06852 Canola peroxisome 73.07 73.27
CDX97462 Canola peroxisome 72.79 73.09
CDY66477 Canola peroxisome 72.79 73.09
AT4G29010.1 Thale cress peroxisome 72.65 72.95
CDY69211 Canola mitochondrion, peroxisome 61.19 72.62
GSMUA_Achr7P14420_001 Banana peroxisome 71.55 71.45
Bra010347.1-P Field mustard peroxisome 72.1 71.12
Bra024170.1-P Field mustard peroxisome 69.61 68.39
TraesCS6B01G153900.1 Wheat peroxisome 68.37 68.18
TraesCS6D01G116200.1 Wheat golgi, peroxisome 68.09 67.91
TraesCS6A01G125800.1 Wheat golgi 67.68 67.49
EES04919 Sorghum peroxisome 67.68 67.4
HORVU3Hr1G013880.1 Barley peroxisome 67.4 67.03
TraesCS3D01G077200.1 Wheat peroxisome 67.4 66.85
HORVU6Hr1G024100.1 Barley peroxisome 66.85 66.67
Os02t0274100-01 Rice plasma membrane 66.71 66.53
TraesCS3A01G077000.3 Wheat peroxisome 67.54 65.73
TraesCS3B01G091200.1 Wheat endoplasmic reticulum, vacuole 62.85 65.66
GSMUA_Achr8P19760_001 Banana peroxisome 66.16 65.53
CDX92908 Canola peroxisome 69.2 63.66
Zm00001d053308_P009 Maize peroxisome 66.57 62.68
Solyc08g068390.2.1 Tomato peroxisome 61.19 62.39
Solyc12g099440.1.1 Tomato nucleus 57.87 57.63
Solyc01g066620.2.1 Tomato plastid 51.66 52.45
Solyc06g009160.2.1 Tomato cytosol 47.51 46.99
Zm00001d015992_P001 Maize peroxisome 66.57 40.1
Solyc07g063010.2.1 Tomato nucleus 11.19 27.36
Solyc01g059830.2.1 Tomato nucleus, plastid 9.25 25.28
Solyc08g078130.2.1 Tomato mitochondrion 9.39 21.86
Solyc05g005180.2.1 Tomato nucleus 9.67 20.77
Solyc05g024240.2.1 Tomato nucleus 6.63 20.69
Protein Annotations
KEGG:00062+4.2.1.17+1.1.1.35KEGG:00071+4.2.1.17+1.1.1.35KEGG:00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8KEGG:00120+1.1.1.35KEGG:00280+4.2.1.17+1.1.1.35KEGG:00281+4.2.1.17+1.1.1.35
KEGG:00310+4.2.1.17+1.1.1.35KEGG:00360+4.2.1.17KEGG:00362+4.2.1.17+1.1.1.35KEGG:00380+4.2.1.17+1.1.1.35KEGG:00410+4.2.1.17KEGG:00592+4.2.1.17
KEGG:00623+1.1.1.35KEGG:00627+4.2.1.17KEGG:00640+4.2.1.17KEGG:00650+4.2.1.17+1.1.1.35KEGG:00650+5.1.2.3+4.2.1.17+1.1.1.35KEGG:00720+4.2.1.17+1.1.1.35
KEGG:00903+4.2.1.17KEGG:00930+4.2.1.17+1.1.1.35Gene3D:1.10.1040.50InterPro:3-OHacyl-CoA_DH_NAD-bdGene3D:3.40.50.720Gene3D:3.90.226.10
InterPro:3HC_DH_CMapMan:5.7.3.2.2InterPro:6-PGluconate_DH-like_C_sfInterPro:AIM1InterPro:ClpP/crotonase-like_dom_sfInterPro:Enoyl-CoA_hyd/isom_CS
InterPro:Enoyl-CoA_hydra/isoGO:GO:0003674GO:GO:0003824GO:GO:0003857GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005777GO:GO:0006629
GO:GO:0006631GO:GO:0006635GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009987
GO:GO:0016491GO:GO:0055114InterPro:IPR000048InterPro:IQ_motif_EF-hand-BSUniProt:K4DBQ4InterPro:NAD(P)-bd_dom_sf
PFAM:PF00378PFAM:PF00725PFAM:PF02737ScanProsite:PS00166PFscan:PS50096PANTHER:PTHR23309
PANTHER:PTHR23309:SF10SUPFAM:SSF48179SUPFAM:SSF51735SUPFAM:SSF52096EnsemblPlantsGene:Solyc12g007170.1EnsemblPlants:Solyc12g007170.1.1
UniParc:UPI00027693EBSEG:seg::::
Description
No Description!
Coordinates
chr12:+:1605539..1615180
Molecular Weight (calculated)
78650.5 Da
IEP (calculated)
9.600
GRAVY (calculated)
0.067
Length
724 amino acids
Sequence
(BLAST)
001: MAKAKVTMEV GNDGVAVITF VNPPVNALAI QIFAGLKEKW NEAAMRNDVK AIVLTGYGGR FSGGFDINVF EKVHKTDDVS LLPDVSVDLV TNIMEDGKKP
101: AVAVVEGLCL GGGLELALGC HARIAAPRTQ LGLPELSLGV LPGSGGTQRL PRLIGLSKAI DMMMTSKPIM SEEGEKLGLI DAVVPSKELL KVARQWALDI
201: AERRKPWMRA LHRTDKIGSL SEAHEVLKLA RKQVKQTARN MPQHLACLDV IEEGIVHGGY NGILKEAKVF EDLVLSDTSR GLVHVFFAQR ATSKVPNVTD
301: IGLKPRSVKK VAIIGGGLMG SGIATSLVLS NIFVIIKEIN PEYLQKGIKT VEANIRGLVA RKKLQQDKAN KALSMVKGVL DYSEFKDVDM VIEAVIENVP
401: LKQQIFIDIE KICPPHCILA SNTSTIDLNI IGQKTSSQDR IIGAHFFSPA HVMPLLEIIR TEKTSAQAIL DLMAVGKTIK KVPVVVGNCT GFAVNRTFFP
501: YAQSAQFLAN LGVDVYRIDA QIINFGLPIG PFQLQDLAGY GVAIATGKEY SSAFPDRVFM SPLLDLLIKS GRNGKNNGKG YYIYKKGEKP RPDPSVLPII
601: EESRRLTNIM PGGKPISITD QEIVEMILFP VVNEACRVLD EGVVVRASDL DVASVLGMSF PSYRGGIVFW GDTVGAGHIY KSLRKWSEVY GNFFKPSKFL
701: EERAAKGIPL SAPAATSSTS RSRM
Best Arabidopsis Sequence Match ( AT4G29010.1 )
(BLAST)
001: MAKKIGVTME VGNDGVAVIT ISNPPVNSLA SPIISGLKEK FRDANQRNDV KAIVLIGNNG RFSGGFDINV FQQVHKTGDL SLMPEVSVEL VCNLMEDSRK
101: PVVAAVEGLA LGGGLELAMA CHARVAAPKA QLGLPELTLG VIPGFGGTQR LPRLVGLAKA TDMILLSKSI SSEEGHKLGL IDALVPPGDV LSTSRKWALD
201: IAEGRKPFLQ SLHRTDKIGS LSEARAILKN SRQLAKKIAP NMPQHHACIE VIEEGIIHGG YSGVLKEAEV FKQLVLSDTA KGLVHVFFAQ RATSKVPNVT
301: DVGLKPRPIK KVAVIGGGLM GSGIATALLL SNIRVVLKEI NSEFLMKGIK SVEANMKSLV SRGKLTQDKA GKALSLFKGV LDYTEFNDVD MVIEAVIENI
401: QLKQNIFKEI EKVCSPHCIL ASNTSTIDLD VIGEKTNSKD RIVGAHFFSP AHLMPLLEIV RSKNTSAQVI LDLMAVGKAI KKVPVVVGNC IGFAVNRTFF
501: PYSQAAHMLA NLGVDLFRID SVITSFGLPL GPFQLGDLAG HGIGLAVGPI YAKVYGDRMF RSPMTELLLK SGRNGKINGR GYYIYEKGSK PKPDPSVLSI
601: VEKSRKLTNI MPGGKPISVT DKEIVEMILF PVVNEACRVL DEGVVIRASD LDIASVLGMS FPSYRGGIVF WADTVGPKYI YERLKKLSET YGSFFKPSRY
701: LEERAMNGML LSESKSSRSK L
Arabidopsis Description
AIM1Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPI6]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.