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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 1
  • peroxisome 5
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, peroxisome, plastid
BaCelLo:cytosol
EpiLoc:peroxisome
iPSORT:mitochondrion
MultiLoc:peroxisome
Plant-mPloc:peroxisome
PProwler:peroxisome
WoLF PSORT:plastid
YLoc:peroxisome
 nucleus: 25464976
plastid: 26371478
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400011792 Potato peroxisome 98.49 98.49
VIT_05s0077g02140.t01 Wine grape peroxisome 82.12 82.46
KRH50818 Soybean nucleus 79.78 80.11
KRH02269 Soybean peroxisome 78.95 79.39
CDY08028 Canola peroxisome 77.44 77.55
CDY24662 Canola peroxisome 77.3 77.41
CDX74076 Canola peroxisome 77.03 77.14
Bra029608.1-P Field mustard peroxisome 76.89 77.1
CDY34924 Canola peroxisome 77.03 77.03
Bra001221.1-P Field mustard peroxisome 76.75 76.97
KRH02268 Soybean nucleus 76.34 76.87
CDY05296 Canola peroxisome 76.62 76.83
Bra040296.1-P Field mustard peroxisome 76.48 76.69
AT3G06860.1 Thale cress peroxisome 76.34 76.55
GSMUA_Achr2P01720_001 Banana peroxisome 75.1 75.83
Solyc01g066620.2.1 Tomato plastid 72.21 73.63
EES18080 Sorghum peroxisome 66.16 66.99
Zm00001d037939_P003 Maize peroxisome 66.02 66.85
TraesCS1A01G231100.1 Wheat peroxisome 66.02 66.76
TraesCS1B01G243300.1 Wheat peroxisome 63.27 66.19
TraesCS1D01G231000.1 Wheat golgi, peroxisome, unclear 65.34 66.06
HORVU1Hr1G058880.12 Barley peroxisome 65.06 65.88
GSMUA_Achr3P24070_001 Banana cytosol, peroxisome, plastid 63.41 64.39
Os05t0362100-01 Rice cytosol, mitochondrion, peroxisome 40.72 63.66
KRG94502 Soybean peroxisome 19.26 60.34
Solyc07g019670.2.1 Tomato plastid 57.91 58.23
Solyc12g007170.1.1 Tomato plastid 57.63 57.87
Solyc06g009160.2.1 Tomato cytosol 57.63 57.24
Solyc08g068390.2.1 Tomato peroxisome 52.27 53.52
Solyc07g063010.2.1 Tomato nucleus 10.32 25.34
Solyc01g059830.2.1 Tomato nucleus, plastid 8.8 24.15
Solyc08g078130.2.1 Tomato mitochondrion 10.04 23.47
Solyc05g024240.2.1 Tomato nucleus 7.15 22.41
Solyc05g005180.2.1 Tomato nucleus 7.98 17.21
Protein Annotations
KEGG:00062+4.2.1.17+1.1.1.35KEGG:00071+4.2.1.17+1.1.1.35KEGG:00071+5.1.2.3+4.2.1.17+1.1.1.35KEGG:00120+1.1.1.35KEGG:00280+4.2.1.17+1.1.1.35KEGG:00281+4.2.1.17+1.1.1.35
KEGG:00310+4.2.1.17+1.1.1.35KEGG:00360+4.2.1.17KEGG:00362+4.2.1.17+1.1.1.35KEGG:00380+4.2.1.17+1.1.1.35KEGG:00410+4.2.1.17KEGG:00592+4.2.1.17
KEGG:00623+1.1.1.35KEGG:00627+4.2.1.17KEGG:00640+4.2.1.17KEGG:00650+4.2.1.17+1.1.1.35KEGG:00650+5.1.2.3+4.2.1.17+1.1.1.35KEGG:00720+4.2.1.17+1.1.1.35
KEGG:00903+4.2.1.17KEGG:00930+4.2.1.17+1.1.1.35Gene3D:1.10.1040.50InterPro:3-OHacyl-CoA_DH_CSInterPro:3-OHacyl-CoA_DH_NAD-bdGene3D:3.40.50.720
Gene3D:3.90.226.10InterPro:3HC_DH_CMapMan:5.7.3.2.2InterPro:6-PGluconate_DH-like_C_sfInterPro:ClpP/crotonase-like_dom_sfInterPro:Enoyl-CoA_hyd/isom_CS
InterPro:Enoyl-CoA_hydra/isoGO:GO:0003674GO:GO:0003824GO:GO:0003857GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005777GO:GO:0006629GO:GO:0006631GO:GO:0006635
GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009987GO:GO:0016491GO:GO:0055114
UniProt:K4DHW5InterPro:NAD(P)-bd_dom_sfPFAM:PF00378PFAM:PF00725PFAM:PF02737ScanProsite:PS00067
ScanProsite:PS00166PANTHER:PTHR23309PANTHER:PTHR23309:SF23SUPFAM:SSF48179SUPFAM:SSF51735SUPFAM:SSF52096
EnsemblPlantsGene:Solyc12g099440.1EnsemblPlants:Solyc12g099440.1.1UniParc:UPI000276A6C8SEG:seg::
Description
No Description!
Coordinates
chr12:+:66590896..66598574
Molecular Weight (calculated)
79236.0 Da
IEP (calculated)
9.386
GRAVY (calculated)
0.003
Length
727 amino acids
Sequence
(BLAST)
001: MSKSSNPKGR TTIEVGADGV AVITIINPPV NSLALDVLYS LKENYDQALR RDDVKAIVVI GANGKFSGGF DISAFGKLQG GTVESPKPGF ISVEILTDTV
101: EAARKPSVAA IDGLALGGGL EVAMACHARI STPNAQLGLP ELQLGILPGF GGTQRLPRLV GLAKSLEMML TSKPVKGEEA VNLGLVDAVV PSNQLLDTAR
201: KWALDILECR KPWVASLHKT DKIEPLGEAR EVLKFARVQT RRQAPNLQHP LVVIDVVEEG IVSGPRAGLW KEAEAFQSLL HSDTCKALVS VFFAQRATTK
301: VPGVTDLGLK PRRIKKVAIL GGGLMGSGIA TALLLSNYPV ILKEVNDKFL QAGLGRVKAN LQSSVKKGKM SPEKFEKTLS LLKGALDYED FRDVDMVIEA
401: VIENVSLKQQ IFADLEKYCP PHCILGSNTS TIDLNLIGEK TKSQDRIIGA HFFSPAHVMP LLEIVRTQKT SPQVIVDLLD VGKKIRKTPV VVGNCTGFAV
501: NRMFFPYTQA ALLLVERGAD VFRIDRVITK FGMPMGPFRL CDLVGFGVAI ATGGQFVMNF PERTYKSMLI PLMQEDKRAG ETTRRGFYVY DDRRKASPDP
601: EIKKYIEKAR EMSGVTIDPK MAKLSDKDII EMIFFPVVNE ACRVLAEGIA VKSSDLDISA IMGMGFPPYR GGIIFWADTL GSKYICSRLD EWSRMYGDFF
701: KPCSYLAERA SKGAPLNAAT DSAKSRL
Best Arabidopsis Sequence Match ( AT3G06860.1 )
(BLAST)
001: MDSRTKGKTV MEVGGDGVAV ITLINPPVNS LSFDVLYNLK SNYEEALSRN DVKAIVITGA KGRFSGGFDI SGFGEMQKGN VKEPKAGYIS IDIITDLLEA
101: ARKPSVAAID GLALGGGLEL AMACHARISA PAAQLGLPEL QLGVIPGFGG TQRLPRLVGL TKALEMILTS KPVKAEEGHS LGLIDAVVPP AELVTTARRW
201: ALDIVGRRKP WVSSVSKTDK LPPLGEAREI LTFAKAQTLK RAPNMKHPLM CLDAIEVGIV SGPRAGLEKE AEVASQVVKL DTTKGLIHVF FSQRGTAKVP
301: GVTDRGLVPR KIKKVAIIGG GLMGSGIATA LILSNYPVIL KEVNEKFLEA GIGRVKANLQ SRVRKGSMSQ EKFEKTMSLL KGSLDYESFR DVDMVIEAVI
401: ENISLKQQIF ADLEKYCPQH CILASNTSTI DLNKIGERTK SQDRIVGAHF FSPAHIMPLL EIVRTNHTSA QVIVDLLDVG KKIKKTPVVV GNCTGFAVNR
501: MFFPYTQAAM FLVECGADPY LIDRAISKFG MPMGPFRLCD LVGFGVAIAT ATQFIENFSE RTYKSMIIPL MQEDKRAGEA TRKGFYLYDD KRKAKPDPEL
601: KKYIEKARSI SGVKLDPKLA NLSEKDIIEM TFFPVVNEAC RVFAEGIAVK AADLDIAGIM GMGFPPYRGG IMFWADSIGS KYIYSRLDEW SKAYGEFFKP
701: CAFLAERGSK GVLLSAPVKQ ASSRL
Arabidopsis Description
MFP2Peroxisomal fatty acid beta-oxidation multifunctional protein MFP2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPI5]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.