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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome

Predictor Summary:
  • cytosol 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • peroxisome 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:peroxisome
Any Predictor:cytosol, mitochondrion, peroxisome, secretory
BaCelLo:cytosol
EpiLoc:cytosol
iPSORT:secretory
MultiLoc:peroxisome
Plant-mPloc:peroxisome
PProwler:mitochondrion
PTS1:peroxisome
WoLF PSORT:cytosol
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc07g063010.2.1 Tomato nucleus 97.3 97.3
CDX98542 Canola peroxisome 75.34 76.9
AT3G15290.1 Thale cress cytosol, mitochondrion, peroxisome 75.68 76.19
VIT_19s0014g02370.t01 Wine grape peroxisome 76.01 76.01
Bra027263.1-P Field mustard peroxisome 74.66 75.17
KRH55235 Soybean peroxisome 61.15 72.69
GSMUA_Achr9P20010_001 Banana peroxisome 70.95 70.47
CDX97647 Canola peroxisome 74.32 69.84
EES01597 Sorghum peroxisome, plasma membrane 70.27 69.57
TraesCS3D01G321200.1 Wheat peroxisome 70.27 68.42
TraesCS3A01G327700.1 Wheat peroxisome 70.27 68.42
KRH55427 Soybean nucleus 73.31 68.03
Zm00001d012590_P001 Maize extracellular 68.58 67.89
Os01t0796400-01 Rice nucleus 68.92 67.55
TraesCS3B01G357200.1 Wheat peroxisome 71.28 63.55
PGSC0003DMT400029427 Potato endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole 12.16 12.77
PGSC0003DMT400014020 Potato peroxisome 29.73 12.21
PGSC0003DMT400009982 Potato peroxisome 27.03 11.24
PGSC0003DMT400001017 Potato cytosol 27.36 11.19
PGSC0003DMT400011792 Potato peroxisome 26.35 10.73
PGSC0003DMT400046197 Potato cytosol 9.8 10.1
PGSC0003DMT400067466 Potato mitochondrion 5.41 5.14
HORVU5Hr1G076170.6 Barley plastid 4.39 4.38
PGSC0003DMT400035160 Potato mitochondrion 4.05 3.53
HORVU6Hr1G021980.6 Barley cytosol 3.04 3.2
PGSC0003DMT400003039 Potato cytosol 2.7 3.02
Protein Annotations
KEGG:00062+4.2.1.17+1.1.1.35KEGG:00071+4.2.1.17+1.1.1.35KEGG:00071+5.1.2.3+4.2.1.17+1.1.1.35KEGG:00120+1.1.1.35KEGG:00280+4.2.1.17+1.1.1.35KEGG:00281+4.2.1.17+1.1.1.35
KEGG:00310+4.2.1.17+1.1.1.35KEGG:00360+4.2.1.17KEGG:00362+4.2.1.17+1.1.1.35KEGG:00380+4.2.1.17+1.1.1.35KEGG:00410+4.2.1.17KEGG:00592+4.2.1.17
KEGG:00623+1.1.1.35KEGG:00627+4.2.1.17KEGG:00640+4.2.1.17KEGG:00650+4.2.1.17+1.1.1.35KEGG:00650+5.1.2.3+4.2.1.17+1.1.1.35KEGG:00720+4.2.1.17+1.1.1.35
KEGG:00903+4.2.1.17KEGG:00930+4.2.1.17+1.1.1.35Gene3D:1.10.1040.10EntrezGene:102593138InterPro:3-OHacyl-CoA_DHInterPro:3-OHacyl-CoA_DH_CS
InterPro:3-OHacyl-CoA_DH_NAD-bdGene3D:3.40.50.720MapMan:35.1InterPro:3HC_DH_CInterPro:6-PGluconate_DH-like_C_sfInterPro:6PGD_dom2
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003857GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005777GO:GO:0006629GO:GO:0006631
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016491GO:GO:0055114GO:GO:0070403
InterPro:IPR013328UniProt:M1AX71InterPro:NAD(P)-bd_dom_sfPFAM:PF00725PFAM:PF02737EnsemblPlantsGene:PGSC0003DMG400012409
PGSC:PGSC0003DMG400012409EnsemblPlants:PGSC0003DMT400032309PIRSF:PIRSF000105ScanProsite:PS00067PANTHER:PTHR43145PANTHER:PTHR43145:SF4
SUPFAM:SSF48179SUPFAM:SSF51735UniParc:UPI000295514ARefSeq:XP_006348261.1::
Description
3-hydroxyacyl-CoA dehyrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400012409]
Coordinates
chr7:+:53103582..53106334
Molecular Weight (calculated)
31760.6 Da
IEP (calculated)
7.337
GRAVY (calculated)
0.097
Length
296 amino acids
Sequence
(BLAST)
001: MADIARIGVV GAGQMGAGIA QLAAVNGVDV WLYDLDSEAL TKAQKSISNN IQRLLTKGQI SQATSVDAVK RLCCSSRLED LHSVDIVVEA ILESEQVKKT
101: LFANLDKIVK SSAILASNTS SISITRLASA TSRPSQVIGM HFMNPPPIMK LVEIIRGADT SEDTYCATKC LAERFGKTVI CSQDYSGFIV NRILMPMINE
201: AFHTLYTGVA TKEDIDTGMK LGTNHPMGPL ELADFIGLDV CLSIMKVLQA GLGDDKYAPC PLLVQYVDAG RLGKKRGVGV YDYRDAAAKT GGSPRL
Best Arabidopsis Sequence Match ( AT3G15290.1 )
(BLAST)
001: MAEMKSVGVV GAGQMGSGIA QLAATSGLDV WLMDADRDAL SRATAAISSS VKRFVSKGLI SKEVGDDAMH RLRLTSNLED LCSADIIVEA IVESEDIKKK
101: LFKDLDGIAK SSAILASNTS SISITRLASA TRRPSQVIGM HFMNPPPIMK LVEIIRGADT SEETFLATKV LAERFGKTTV CSQDYAGFVV NRILMPMINE
201: AFHTLYTGVA TKEDIDSGMK HGTNHPMGPL ELADLIGLDV CLSVMKVLHE GLGDSKYAPC PLLVQYVDAG RLGRKRGVGV YDYREATQKL SPRL
Arabidopsis Description
3-hydroxyacyl-CoA dehydrogenase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LDF5]
SUBAcon: [mitochondrion,peroxisome,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.