Factsheet for PGSC0003DMT400000771

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000771
PGSC0003DMT400008587
PGSC0003DMT400008605
PGSC0003DMT400013977
PGSC0003DMT400043903
PGSC0003DMT400055203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26200.1	PGSC0003DMT400008587	AT2G22810.1	14983000
AT4G26200.1	PGSC0003DMT400008605	AT2G22810.1	14983000
AT4G26200.1	PGSC0003DMT400013977	AT2G22810.1	14983000
AT4G26200.1	PGSC0003DMT400055203	AT2G22810.1	14983000
AT4G26200.1	PGSC0003DMT400000771	AT4G26200.1	14983000
AT4G26200.1	PGSC0003DMT400043903	AT4G26200.1	14983000

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g008740.1.1	Tomato	cytosol	97.23	97.23
PGSC0003DMT400043903	Potato	cytosol	82.49	81.18
VIT_11s0016g02560.t01	Wine grape	cytosol, nucleus, peroxisome	81.34	79.33
KRH41440	Soybean	cytosol	78.34	77.27
KRH60148	Soybean	cytosol	78.11	77.05
KRH49039	Soybean	cytosol	77.65	75.56
KRH74169	Soybean	cytosol	77.65	75.56
AT4G26200.1	Thale cress	cytosol	75.81	73.6
CDX89355	Canola	cytosol	75.58	73.21
Bra026456.1-P	Field mustard	cytosol	75.35	72.99
CDX94359	Canola	cytosol	75.12	72.77
CDY71142	Canola	cytosol	74.88	72.54
Bra019117.1-P	Field mustard	cytosol	75.35	72.51
CDY42751	Canola	cytosol	75.35	72.51
CDX92755	Canola	cytosol	68.66	71.63
CDY72652	Canola	cytosol	32.95	71.14
PGSC0003DMT400008587	Potato	cytosol	57.14	53.8
PGSC0003DMT400008605	Potato	cytosol	52.3	53.66
PGSC0003DMT400013977	Potato	cytosol	44.93	52.28
PGSC0003DMT400055203	Potato	cytosol	56.45	52.24
PGSC0003DMT400014932	Potato	cytosol	56.91	50.82
PGSC0003DMT400031769	Potato	cytosol	56.45	50.52
PGSC0003DMT400032096	Potato	cytosol	56.22	50.41
PGSC0003DMT400012600	Potato	cytosol	54.15	50.32
PGSC0003DMT400000553	Potato	cytosol	55.99	50.0
PGSC0003DMT400084228	Potato	cytosol	20.05	49.71
PGSC0003DMT400012864	Potato	cytosol	53.92	48.25
PGSC0003DMT400055753	Potato	vacuole	40.55	46.32
PGSC0003DMT400079664	Potato	golgi, mitochondrion, plastid	46.77	40.28
PGSC0003DMT400092723	Potato	cytosol	9.68	35.9
PGSC0003DMT400010000	Potato	plastid	45.39	35.82
PGSC0003DMT400012549	Potato	cytosol, mitochondrion	22.58	20.12
PGSC0003DMT400047918	Potato	cytosol	21.43	19.33
PGSC0003DMT400042202	Potato	cytosol, mitochondrion, peroxisome, plastid	2.53	12.94

Protein Annotations

MapMan:11.5.1.1	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	InterPro:Aminotransferase_I/II	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0030170	InterPro:IPR015421
InterPro:IPR015422	UniProt:M0ZHA2	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	EnsemblPlantsGene:PGSC0003DMG400000284	PGSC:PGSC0003DMG400000284
EnsemblPlants:PGSC0003DMT400000771	PRINTS:PR00753	ScanProsite:PS00105	PANTHER:PTHR43795	PANTHER:PTHR43795:SF28	InterPro:PyrdxlP-dep_Trfase
InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI0002955132	:	:

Description

1-aminocyclopropane-1-carboxylate synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400000284]

Coordinates

chr12:+:3809539..3812003

Molecular Weight (calculated)

48968.3 Da

IEP (calculated)

6.425

GRAVY (calculated)

-0.308

Length

434 amino acids

Sequence
(BLAST)

001: MAIVELSKVA NSDTHGEDSP YFAGWKAYDE DPFDEVHNPC GVIQMGLAEN QVSFDMVEEY LEKHSKTINC GSGISNFREN ALFQDYHGLY SFRKSMAKFM
101: EKIRGGRAKF NPDRIVITAG ATAANELLTF ILADPGDALL VPTPYYPGFD RDLRWRTGVK IIPIHCNSSN NFQVTPQALE SAYEEAKVNK IKVRGILITN
201: PSNPLGATIQ RSNLEGILDF VVRKNIHLIS DEIYSGSAFC SSEFVSIAEV LESRDDVDSE RVHIVYSLSK DLGLPGFRVG TIYSYNDNVV TTARRMSSFT
301: LISSQTQQLL ASMLSNEEFT TNYIKTNRDR LRKRYEKIID GLKSSGIECL KGNAGLFCWM NLSQLLEKST KECELELWNS ILCEVKLNIS PGSSCHCSEP
401: GWFRVCFANM SEQTLEIALK RLHNFMQRRT QKKD

Best Arabidopsis Sequence Match ( AT4G26200.1 )
(BLAST)

001: MGLPLMMERS SNNNNVELSR VAVSDTHGED SPYFAGWKAY DENPYDESHN PSGVIQMGLA ENQVSFDLLE TYLEKKNPEG SMWGSKGAPG FRENALFQDY
101: HGLKTFRQAM ASFMEQIRGG KARFDPDRIV LTAGATAANE LLTFILADPN DALLVPTPYY PGFDRDLRWR TGVKIVPIHC DSSNHFQITP EALESAYQTA
201: RDANIRVRGV LITNPSNPLG ATVQKKVLED LLDFCVRKNI HLVSDEIYSG SVFHASEFTS VAEIVENIDD VSVKERVHIV YSLSKDLGLP GFRVGTIYSY
301: NDNVVRTARR MSSFTLVSSQ TQHMLASMLS DEEFTEKYIR INRERLRRRY DTIVEGLKKA GIECLKGNAG LFCWMNLGFL LEKKTKDGEL QLWDVILKEL
401: NLNISPGSSC HCSEVGWFRV CFANMSENTL EIALKRIHEF MDRRRRF

Arabidopsis Description

ACS71-aminocyclopropane-1-carboxylate synthase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9STR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.