Factsheet for PGSC0003DMT400031185

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 3
golgi 2
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55628	Soybean	cytosol	44.23	63.01
PGSC0003DMT400063227	Potato	cytosol	79.81	51.88
PGSC0003DMT400015836	Potato	cytosol, nucleus, plastid	91.35	47.98
PGSC0003DMT400009227	Potato	cytosol	90.38	47.72
PGSC0003DMT400058108	Potato	cytosol	90.38	47.72
PGSC0003DMT400061371	Potato	cytosol	90.38	47.72
PGSC0003DMT400027852	Potato	cytosol	86.54	45.69
Solyc10g055520.1.1	Tomato	cytosol	63.46	41.51
PGSC0003DMT400004254	Potato	cytosol	82.69	41.35
PGSC0003DMT400022302	Potato	cytosol	81.73	40.48
PGSC0003DMT400063229	Potato	cytosol	81.73	40.48
PGSC0003DMT400000816	Potato	cytosol	77.88	38.39
PGSC0003DMT400031188	Potato	cytosol	1.92	2.44

Protein Annotations

MapMan:27.4.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154
GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787
InterPro:IPR003578	UniProt:M1AVA7	InterPro:P-loop_NTPase	PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG401011945	PGSC:PGSC0003DMG401011945
EnsemblPlants:PGSC0003DMT400031185	PRINTS:PR00449	PFscan:PS51420	PANTHER:PTHR24072	PANTHER:PTHR24072:SF179	SMART:SM00173
SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	InterPro:Small_GTPase_Rho
TIGRFAMs:TIGR00231	UniParc:UPI0002964A65	:	:	:	:

Description

Rho GTPase [Source:PGSC_GENE;Acc:PGSC0003DMG401011945]

Coordinates

chr10:+:47155110..47156404

Molecular Weight (calculated)

11291.3 Da

IEP (calculated)

7.249

GRAVY (calculated)

0.028

Length

104 amino acids

Sequence
(BLAST)

001: MSGSRFIKCV TVGDGAVGKT CLLISYTSNT FPTDYVPTVF DNFSANVVVD GSTINLGLWD TAGQEDYNRL RPLSYRGADA FILAFSLISK ASHENVSKKV
101: QSPF

Best Arabidopsis Sequence Match ( AT4G35020.1 )
(BLAST)

001: MSASRFIKCV TVGDGAVGKT CLLISYTSNT FPTDYVPTVF DNFSANVIVD GNTINLGLWD TAGQEDYNRL RPLSYRGADV FLLAFSLVSK ASYENVSKKW
101: VPELRHYAPG VPIILVGTKL DLRDDKQFFA EHPGAVPIST AQGEELKKLI GAPAYIECSA KTQQNVKAVF DAAIKVVLQP PKNKKKKKRK SQKGCSIL

Arabidopsis Description

ARAC3At4g35020 [Source:UniProtKB/TrEMBL;Acc:Q5PNX9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.