CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88130
EES05544
KXG27287

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36910.1	KXG27287	AT1G22920.1	21798944
AT4G36910.1	EER88130	AT3G48040.1	21798944
AT4G36910.1	EES05544	AT3G48040.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004354_P001	Maize	plastid	84.21	75.89
GSMUA_Achr7P05420_001	Banana	cytosol	47.81	69.87
Os09t0115500-01	Rice	plastid	69.3	69.6
GSMUA_Achr1P26070_001	Banana	cytosol	43.86	63.29
TraesCS5B01G159500.1	Wheat	plastid	64.04	62.39
TraesCS5A01G162000.1	Wheat	plastid	64.04	61.86
TraesCS5D01G166900.1	Wheat	plastid	62.72	61.37
GSMUA_Achr1P15910_001	Banana	plastid	54.39	54.15
Bra011743.1-P	Field mustard	cytosol	12.72	53.7
CDX75630	Canola	cytosol	12.72	53.7
KRH77032	Soybean	plastid	52.63	52.63
KRH28440	Soybean	plastid	52.19	52.19
VIT_07s0031g00200.t01	Wine grape	plastid	55.7	51.63
AT4G36910.1	Thale cress	plastid	52.19	50.42
CDY62227	Canola	plastid	51.32	50.21
CDY29539	Canola	plastid	51.32	50.21
Bra017810.1-P	Field mustard	plastid	51.32	50.21
HORVU5Hr1G050570.1	Barley	plastid	59.21	50.0
PGSC0003DMT400065493	Potato	plastid	50.88	49.15
Solyc02g064950.2.1	Tomato	plastid	50.88	49.15
PGSC0003DMT400010303	Potato	plastid	50.0	48.72
Solyc02g093140.2.1	Tomato	plastid	50.0	48.72

Protein Annotations

Gene3D:3.10.580.10	MapMan:35.1	UniProt:A0A1B6PJL8	InterPro:CBS_dom	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0019725	GO:GO:0045454	InterPro:IPR000644	EnsemblPlants:KXG25872	ProteinID:KXG25872	ProteinID:KXG25872.1
PFAM:PF00571	PFscan:PS51371	PANTHER:PTHR43803	PANTHER:PTHR43803:SF1	SMART:SM00116	EnsemblPlantsGene:SORBI_3006G024500
SUPFAM:SSF54631	UniParc:UPI0002207165	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:4193527..4196770

Molecular Weight (calculated)

24344.3 Da

IEP (calculated)

10.036

GRAVY (calculated)

-0.120

Length

228 amino acids

Sequence
(BLAST)

001: MDIRLLVSAD ATLAAARSRP STSALQRQIV VPGRRRASCR SVRARSAAAA APAAGGISGH SNGVYTVGDF MTGRDNLHVV QPSTPVDQAL ELLVQHKISG
101: LPVVDDDGKL VGVVSDYDLL ALDSISGNEL PDTNTNMFPD VDSTWKTFHE IQRLLSKTNG KVIGDVMTSS PLAVRQNTNL DAATRLLLET KYRRLPVVDS
201: MGKLVGMITR GNVVSAALKI KKKTEEGA

Best Arabidopsis Sequence Match ( AT4G34120.1 )
(BLAST)

001: MGSISLSNSM PITRLPLLTS LYHQSFLPIS SSSFSLLPLS NRRRSSTFSP SITVSAFFAA PASVNNNNSV PAKNGGYTVG DFMTPRQNLH VVKPSTSVDD
101: ALELLVEKKV TGLPVIDDNW TLVGVVSDYD LLALDSISGR SQNDTNLFPD VDSTWKTFNE LQKLISKTYG KVVGDLMTPS PLVVRDSTNL EDAARLLLET
201: KFRRLPVVDA DGKLIGILTR GNVVRAALQI KRETENST

Arabidopsis Description

CBSX2CBS domain-containing protein CBSX2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5D0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.