CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79923
CDY22534
CDY22789
CDY23835
CDY35405
CDY42508

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34120.1	CDY22789	AT1G50320.1	23220733
AT4G34120.1	CDY42508	AT1G50320.1	23220733
AT4G34120.1	CDX79923	AT2G41680.1	21798944
AT4G34120.1	CDY22534	AT2G41680.1	21798944
AT4G34120.1	CDY23835	AT2G41680.1	21798944
AT4G34120.1	CDY35405	AT2G41680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72451	Canola	plastid	97.37	97.37
CDX69026	Canola	plastid	73.25	79.15
CDX75398	Canola	plastid	78.07	78.07
CDY51959	Canola	plastid	78.51	76.5
CDY62720	Canola	plastid	76.75	76.42
AT4G34120.1	Thale cress	plastid	75.88	72.69
Bra017627.1-P	Field mustard	plastid	87.28	71.07
CDX75630	Canola	cytosol	14.47	61.11
VIT_03s0063g00060.t01	Wine grape	plastid	58.77	58.26
KRH70676	Soybean	plastid	57.46	58.22
CDY62227	Canola	plastid	57.89	56.65
CDY29539	Canola	plastid	57.46	56.22
KRH50338	Soybean	plastid	54.39	55.86
Solyc01g107860.2.1	Tomato	plastid	54.39	51.24
PGSC0003DMT400066577	Potato	plastid	50.88	50.43

Protein Annotations

EnsemblPlants:CDY49275	EnsemblPlantsGene:GSBRNA2T00092690001	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644	PANTHER:PTHR43803
PANTHER:PTHR43803:SF1	PFAM:PF00571	PFscan:PS51371	ProteinID:CDY49275	ProteinID:CDY49275.1	SEG:seg
SMART:SM00116	SUPFAM:SSF54631	UniParc:UPI0004EE8404	UniProt:A0A078IEI0	MapMan:35.1	:

Description

BnaA03g50880DBnaA03g50880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IEI0]

Coordinates

chrLK032822:+:50752..52566

Molecular Weight (calculated)

24482.3 Da

IEP (calculated)

9.117

GRAVY (calculated)

-0.107

Length

228 amino acids

Sequence
(BLAST)

001: MGSISLSNSL PIPRLPLHTS SLNPCLPSSF SLPSRRSTFS PLVSASAVFA APSGVNNSVP GKNGGYTVGD FMTGKQHLHV VKPSTSVDDA LELLVEKKVT
101: GLPVIDDDWN LVGVVSDYDL LALDSISGRS SQNDTNMFPN VDSSWKTFNE LQKLISKTHG KVVGDLMTPS PLVVRGSTNL EDAARLLLET KFRRLPVVNS
201: DGKLIGILTR GNVVRAALQI KRETENST

Best Arabidopsis Sequence Match ( AT4G34120.1 )
(BLAST)

001: MGSISLSNSM PITRLPLLTS LYHQSFLPIS SSSFSLLPLS NRRRSSTFSP SITVSAFFAA PASVNNNNSV PAKNGGYTVG DFMTPRQNLH VVKPSTSVDD
101: ALELLVEKKV TGLPVIDDNW TLVGVVSDYD LLALDSISGR SQNDTNLFPD VDSTWKTFNE LQKLISKTYG KVVGDLMTPS PLVVRDSTNL EDAARLLLET
201: KFRRLPVVDA DGKLIGILTR GNVVRAALQI KRETENST

Arabidopsis Description

CBSX2CBS domain-containing protein CBSX2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5D0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.