Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000234.1-P | |
| Bra004639.1-P | |
| Bra018842.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34120.1 | Bra018842.1-P | AT1G50320.1 | 23220733 |
| AT4G34120.1 | Bra000234.1-P | AT2G41680.1 | 21798944 |
| AT4G34120.1 | Bra004639.1-P | AT2G41680.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49275 | Canola | plastid | 71.07 | 87.28 |
| CDX72451 | Canola | plastid | 69.64 | 85.53 |
| Bra011489.1-P | Field mustard | plastid | 65.71 | 78.63 |
| Bra034605.1-P | Field mustard | plastid | 60.0 | 72.1 |
| AT4G34120.1 | Thale cress | plastid | 59.29 | 69.75 |
| Bra011743.1-P | Field mustard | cytosol | 11.79 | 61.11 |
| KRH70676 | Soybean | plastid | 46.79 | 58.22 |
| KRH50338 | Soybean | plastid | 44.29 | 55.86 |
| VIT_03s0063g00060.t01 | Wine grape | plastid | 43.93 | 53.48 |
| Bra017810.1-P | Field mustard | plastid | 43.57 | 52.36 |
| PGSC0003DMT400066577 | Potato | plastid | 42.5 | 51.74 |
| Solyc01g107860.2.1 | Tomato | plastid | 43.93 | 50.83 |
Protein Annotations
Description
AT4G34120 (E=2e-074) LEJ1, CDCP1 | LEJ1 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1)
Coordinates
chrA03:+:29405160..29407285
Molecular Weight (calculated)
30379.3 Da
IEP (calculated)
7.724
GRAVY (calculated)
-0.133
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSISLSNSL PIPRLPLHTS SLNPSCLPSS FSLPPRRSTF SPLVSASAVF AAPSGVNNSV PGKNGGYTVG DFMTGKQHLH VVKPTTSVDD ALELLVEKKV
101: TGLPVIDDDW NLVGVVSDYD LLALDSISGR SSQNDTNMFP NVDSSWKTFN ELQKLISKTH GKVVGDLMTP SPLVVRGSTN LEDAARLLLE TKFRRLPVVN
201: SDGKLGERCK GCTADQAGNR ELNLASSCAE AWKRLAKVSD QMPQTDFVTW RTFDFWFTHS LIDPVMRCSC LSSVVKTCCS
101: TGLPVIDDDW NLVGVVSDYD LLALDSISGR SSQNDTNMFP NVDSSWKTFN ELQKLISKTH GKVVGDLMTP SPLVVRGSTN LEDAARLLLE TKFRRLPVVN
201: SDGKLGERCK GCTADQAGNR ELNLASSCAE AWKRLAKVSD QMPQTDFVTW RTFDFWFTHS LIDPVMRCSC LSSVVKTCCS
001: MGSISLSNSM PITRLPLLTS LYHQSFLPIS SSSFSLLPLS NRRRSSTFSP SITVSAFFAA PASVNNNNSV PAKNGGYTVG DFMTPRQNLH VVKPSTSVDD
101: ALELLVEKKV TGLPVIDDNW TLVGVVSDYD LLALDSISGR SQNDTNLFPD VDSTWKTFNE LQKLISKTYG KVVGDLMTPS PLVVRDSTNL EDAARLLLET
201: KFRRLPVVDA DGKLIGILTR GNVVRAALQI KRETENST
101: ALELLVEKKV TGLPVIDDNW TLVGVVSDYD LLALDSISGR SQNDTNLFPD VDSTWKTFNE LQKLISKTYG KVVGDLMTPS PLVVRDSTNL EDAARLLLET
201: KFRRLPVVDA DGKLIGILTR GNVVRAALQI KRETENST
Arabidopsis Description
CBSX2CBS domain-containing protein CBSX2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5D0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.