Factsheet for VIT_03s0063g00060.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0007g08760.t01
VIT_10s0042g00200.t01
VIT_10s0042g00430.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34120.1	VIT_10s0042g00200.t01	AT1G50320.1	23220733
AT4G34120.1	VIT_10s0042g00430.t01	AT1G50320.1	23220733
AT4G34120.1	VIT_08s0007g08760.t01	AT2G41680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72451	Canola	plastid	58.7	59.21
CDY49275	Canola	plastid	58.26	58.77
VIT_07s0031g00200.t01	Wine grape	plastid	62.17	58.13
CDX69026	Canola	plastid	52.61	57.35
KRH70676	Soybean	plastid	56.09	57.33
CDX75398	Canola	plastid	55.22	55.7
KRH50338	Soybean	plastid	53.04	54.95
CDY62720	Canola	plastid	53.48	53.71
Bra034605.1-P	Field mustard	plastid	54.35	53.65
Bra011489.1-P	Field mustard	plastid	54.35	53.42
AT4G34120.1	Thale cress	plastid	55.22	53.36
CDY51959	Canola	plastid	53.48	52.56
Solyc01g107860.2.1	Tomato	plastid	53.04	50.41
PGSC0003DMT400066577	Potato	plastid	49.13	49.13
Bra017627.1-P	Field mustard	plastid	53.48	43.93

Protein Annotations

EntrezGene:100257224	wikigene:100257224	Gene3D:3.10.580.10	MapMan:35.1	ProteinID:CBI32380	ProteinID:CBI32380.3
InterPro:CBS_dom	UniProt:D7TPF7	EMBL:FN596006	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987
GO:GO:0019725	GO:GO:0045454	InterPro:IPR000644	EntrezGene:LOC100257224	wikigene:LOC100257224	PFAM:PF00571
PFscan:PS51371	PANTHER:PTHR43803	PANTHER:PTHR43803:SF1	SMART:SM00116	SUPFAM:SSF54631	UniParc:UPI0001982DE1
ArrayExpress:VIT_03s0063g00060	EnsemblPlantsGene:VIT_03s0063g00060	EnsemblPlants:VIT_03s0063g00060.t01	unigene:Vvi.6392	RefSeq:XP_002285148	RefSeq:XP_002285148.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:3594123..3603359

Molecular Weight (calculated)

25022.3 Da

IEP (calculated)

10.209

GRAVY (calculated)

-0.123

Length

230 amino acids

Sequence
(BLAST)

001: MESITFSDLH VIAGPSVTPH GARGGSPSLS RTFFSPSRFR SPVPLVALRR RPAHAAITTN SVPHRNGTYR VGDFMTKKEH LHVVKPTTPV DEALEALVEK
101: KITGFPVIDE DWKLVGLVSD YDLLALDSIS GGAQIDTTLF PDVDSSWKAF NQIQKLLAKT KGKVVGDVMT PAPVVVHETT NLEDAARLLL ETKYRRLPVV
201: DGDGKLVGIV TRGSVVRAAL KIKGTREKLP

Best Arabidopsis Sequence Match ( AT4G36910.1 )
(BLAST)

001: MDAVLYSVPL SFTPLRASSS PSSPYLLLPR FLSVQPCHKF TFSRSFPSKS RIPSASSAAG STLMTNSSSP RSGVYTVGEF MTKKEDLHVV KPTTTVDEAL
101: ELLVENRITG FPVIDEDWKL VGLVSDYDLL ALDSISGSGR TENSMFPEVD STWKTFNAVQ KLLSKTNGKL VGDLMTPAPL VVEEKTNLED AAKILLETKY
201: RRLPVVDSDG KLVGIITRGN VVRAALQIKR SGDRNA

Arabidopsis Description

CBSX1CBS domain-containing protein CBSX1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23193]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.