Factsheet for Bra034605.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000234.1-P
Bra004639.1-P
Bra018842.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34120.1	Bra018842.1-P	AT1G50320.1	23220733
AT4G34120.1	Bra000234.1-P	AT2G41680.1	21798944
AT4G34120.1	Bra004639.1-P	AT2G41680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51959	Canola	plastid	98.28	97.86
CDY62720	Canola	plastid	90.56	92.14
Bra011489.1-P	Field mustard	plastid	80.69	80.34
AT4G34120.1	Thale cress	plastid	81.12	79.41
Bra011743.1-P	Field mustard	cytosol	14.16	61.11
Bra017627.1-P	Field mustard	plastid	72.1	60.0
KRH70676	Soybean	plastid	55.36	57.33
KRH50338	Soybean	plastid	54.51	57.21
Solyc01g107860.2.1	Tomato	plastid	58.8	56.61
VIT_03s0063g00060.t01	Wine grape	plastid	53.65	54.35
Bra017810.1-P	Field mustard	plastid	53.65	53.65
PGSC0003DMT400066577	Potato	plastid	51.07	51.74

Protein Annotations

EnsemblPlants:Bra034605.1	EnsemblPlants:Bra034605.1-P	EnsemblPlantsGene:Bra034605	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644
PANTHER:PTHR43803	PANTHER:PTHR43803:SF1	PFAM:PF00571	PFscan:PS51371	SEG:seg	SMART:SM00116
SUPFAM:SSF54631	UniParc:UPI0002546584	UniProt:M4F0L0	MapMan:35.1	:	:

Description

AT4G34120 (E=1e-087) LEJ1, CDCP1 | LEJ1 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1)

Coordinates

chrA08:-:12571739..12573275

Molecular Weight (calculated)

25312.4 Da

IEP (calculated)

9.127

GRAVY (calculated)

-0.102

Length

233 amino acids

Sequence
(BLAST)

001: MGSVSFSSSM PITRLPLLTS LSQCLLPTSS SFSLPPLSSR RRSSFSQRIT ASAVFSAPAG VNDSLPARNE GYTVGDFMTG RQHLHVVKPS TSVDDALELL
101: VEKKVTGLPV IDDDWKLVGV VSDYDLLALD SISGRSQNET NLFPNVDSTW KTFNELQKLI SKTHGQVVGD LMTPSPLVVR GSTNLEDAAR LLLETKFRRL
201: PVVDSDGKLI GILTRGNVVR AALQIKRETE KSA

Best Arabidopsis Sequence Match ( AT4G34120.1 )
(BLAST)

001: MGSISLSNSM PITRLPLLTS LYHQSFLPIS SSSFSLLPLS NRRRSSTFSP SITVSAFFAA PASVNNNNSV PAKNGGYTVG DFMTPRQNLH VVKPSTSVDD
101: ALELLVEKKV TGLPVIDDNW TLVGVVSDYD LLALDSISGR SQNDTNLFPD VDSTWKTFNE LQKLISKTYG KVVGDLMTPS PLVVRDSTNL EDAARLLLET
201: KFRRLPVVDA DGKLIGILTR GNVVRAALQI KRETENST

Arabidopsis Description

CBSX2CBS domain-containing protein CBSX2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5D0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.