Factsheet for Bra011489.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000234.1-P
Bra004639.1-P
Bra018842.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34120.1	Bra018842.1-P	AT1G50320.1	23220733
AT4G34120.1	Bra000234.1-P	AT2G41680.1	21798944
AT4G34120.1	Bra004639.1-P	AT2G41680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69026	Canola	plastid	76.07	84.36
CDX75398	Canola	plastid	82.05	84.21
Bra034605.1-P	Field mustard	plastid	80.34	80.69
AT4G34120.1	Thale cress	plastid	78.63	77.31
Bra017627.1-P	Field mustard	plastid	78.63	65.71
KRH70676	Soybean	plastid	58.55	60.89
Bra011743.1-P	Field mustard	cytosol	13.68	59.26
KRH50338	Soybean	plastid	54.7	57.66
Solyc01g107860.2.1	Tomato	plastid	57.27	55.37
VIT_03s0063g00060.t01	Wine grape	plastid	53.42	54.35
Bra017810.1-P	Field mustard	plastid	50.85	51.07
PGSC0003DMT400066577	Potato	plastid	48.72	49.57

Protein Annotations

EnsemblPlants:Bra011489.1	EnsemblPlants:Bra011489.1-P	EnsemblPlantsGene:Bra011489	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:IPR000644
PANTHER:PTHR43803	PANTHER:PTHR43803:SF1	PFAM:PF00571	PFscan:PS51371	SEG:seg	SMART:SM00116
SUPFAM:SSF54631	UniParc:UPI0002545AAE	UniProt:M4D4T4	MapMan:35.1	:	:

Description

AT4G34120 (E=4e-092) LEJ1, CDCP1 | LEJ1 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1)

Coordinates

chrA01:-:1962410..1963885

Molecular Weight (calculated)

25426.4 Da

IEP (calculated)

7.843

GRAVY (calculated)

-0.152

Length

234 amino acids

Sequence
(BLAST)

001: MGSISLFNYL PITPLSLHTS LINPTSSSFS LPPPPLSNPR RRSTFSPLVT ASAVFAAPSD VNNSVPSKNG GYTVGDFMTG RQHLHVVKPS TSVDDALELL
101: VEKKVTGLPV IDDDWNLVGV VSDYDLLALD SISGRSSQND TNMFPNVDRS WKTFNELQKL ISKTHGQVVG DLMTPSPLVV RGSTNLEDAA RLLLETKFRR
201: LPVVDSDGKL IGILTRGNVV RAALQIKRET ENST

Best Arabidopsis Sequence Match ( AT4G34120.1 )
(BLAST)

001: MGSISLSNSM PITRLPLLTS LYHQSFLPIS SSSFSLLPLS NRRRSSTFSP SITVSAFFAA PASVNNNNSV PAKNGGYTVG DFMTPRQNLH VVKPSTSVDD
101: ALELLVEKKV TGLPVIDDNW TLVGVVSDYD LLALDSISGR SQNDTNLFPD VDSTWKTFNE LQKLISKTYG KVVGDLMTPS PLVVRDSTNL EDAARLLLET
201: KFRRLPVVDA DGKLIGILTR GNVVRAALQI KRETENST

Arabidopsis Description

CBSX2CBS domain-containing protein CBSX2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5D0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.